miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 3' -55.8 NC_003521.1 + 213115 0.67 0.9322
Target:  5'- cGAC-GCGCUgGGUgUGGCGUGGU-GCGg -3'
miRNA:   3'- -CUGuCGUGGaCCA-GCUGCACCAaCGC- -5'
14624 3' -55.8 NC_003521.1 + 168015 0.67 0.927155
Target:  5'- uGCuGCugCUGGUgGugGUaGGcgUGCGg -3'
miRNA:   3'- cUGuCGugGACCAgCugCA-CCa-ACGC- -5'
14624 3' -55.8 NC_003521.1 + 186765 0.67 0.927155
Target:  5'- cGGCGGCAUCggcGGaggCGGCGgUGGUgGCGg -3'
miRNA:   3'- -CUGUCGUGGa--CCa--GCUGC-ACCAaCGC- -5'
14624 3' -55.8 NC_003521.1 + 118920 0.67 0.927155
Target:  5'- -uCGGCGCCg---CGGCGUGGgcgGCGg -3'
miRNA:   3'- cuGUCGUGGaccaGCUGCACCaa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 207943 0.68 0.921886
Target:  5'- cGGCAGCACC-GG-CGGCGcGGgcGCc -3'
miRNA:   3'- -CUGUCGUGGaCCaGCUGCaCCaaCGc -5'
14624 3' -55.8 NC_003521.1 + 196939 0.68 0.91639
Target:  5'- cGGCAGCACC-GGUa-GCGUGG--GCGa -3'
miRNA:   3'- -CUGUCGUGGaCCAgcUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 206058 0.68 0.91639
Target:  5'- cGACAuGCACCUcaUCGGCGUGGUcuCGu -3'
miRNA:   3'- -CUGU-CGUGGAccAGCUGCACCAacGC- -5'
14624 3' -55.8 NC_003521.1 + 75884 0.68 0.91067
Target:  5'- --gAGCACCUGaucgaaguacuuGUCGGCGUGGauggGCa -3'
miRNA:   3'- cugUCGUGGAC------------CAGCUGCACCaa--CGc -5'
14624 3' -55.8 NC_003521.1 + 167367 0.68 0.907131
Target:  5'- cGACAGCugCUGGguacagauaucgagCGACGcgggcacgcuagUGGggGCGc -3'
miRNA:   3'- -CUGUCGugGACCa-------------GCUGC------------ACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 34222 0.68 0.89476
Target:  5'- aGACGGCGCCcGuGUCGccgcagaggaucuugACGUGGUUGa- -3'
miRNA:   3'- -CUGUCGUGGaC-CAGC---------------UGCACCAACgc -5'
14624 3' -55.8 NC_003521.1 + 102265 0.68 0.892181
Target:  5'- cGACAuGCugCUGa-CGACGUGGUUGa- -3'
miRNA:   3'- -CUGU-CGugGACcaGCUGCACCAACgc -5'
14624 3' -55.8 NC_003521.1 + 184851 0.68 0.892181
Target:  5'- uGCGGCcCCUGcacaUCGGCGUGGUgggGCu -3'
miRNA:   3'- cUGUCGuGGACc---AGCUGCACCAa--CGc -5'
14624 3' -55.8 NC_003521.1 + 126729 0.68 0.892181
Target:  5'- aGGCGGCGC--GGUCGGCGacaUGGcUGCGu -3'
miRNA:   3'- -CUGUCGUGgaCCAGCUGC---ACCaACGC- -5'
14624 3' -55.8 NC_003521.1 + 22984 0.69 0.878775
Target:  5'- gGGCucuGCGCCUGGUUGACgGUGauaGCGg -3'
miRNA:   3'- -CUGu--CGUGGACCAGCUG-CACcaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 35924 0.69 0.878775
Target:  5'- gGugGGCGCCUGGUCcucaacgggGACGUaguguGGUugaccUGCGu -3'
miRNA:   3'- -CugUCGUGGACCAG---------CUGCA-----CCA-----ACGC- -5'
14624 3' -55.8 NC_003521.1 + 239217 0.69 0.871758
Target:  5'- cGCAGCACaggcgCUGGUgGAUGUGGcgcUGCa -3'
miRNA:   3'- cUGUCGUG-----GACCAgCUGCACCa--ACGc -5'
14624 3' -55.8 NC_003521.1 + 38989 0.69 0.871758
Target:  5'- cGCAGCACaggcgCUGGUgGAUGUGGcgcUGCa -3'
miRNA:   3'- cUGUCGUG-----GACCAgCUGCACCa--ACGc -5'
14624 3' -55.8 NC_003521.1 + 172546 0.69 0.864539
Target:  5'- -cCAGCACCUGGUgGAUGcUGGggaUGUu -3'
miRNA:   3'- cuGUCGUGGACCAgCUGC-ACCa--ACGc -5'
14624 3' -55.8 NC_003521.1 + 31011 0.69 0.864539
Target:  5'- cGACGGCGCC-GGcgaggacgcguUCGugGUGGUgggggGUGg -3'
miRNA:   3'- -CUGUCGUGGaCC-----------AGCugCACCAa----CGC- -5'
14624 3' -55.8 NC_003521.1 + 162239 0.7 0.849514
Target:  5'- cGACGGCGCUggcggGGUgGGCGUcaacGGgggUGCGa -3'
miRNA:   3'- -CUGUCGUGGa----CCAgCUGCA----CCa--ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.