miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 3' -55.8 NC_003521.1 + 103436 0.66 0.967687
Target:  5'- cGugAGCuccGCCaGGUCG-CGgcGGUUGCGc -3'
miRNA:   3'- -CugUCG---UGGaCCAGCuGCa-CCAACGC- -5'
14624 3' -55.8 NC_003521.1 + 104169 0.7 0.849514
Target:  5'- cGGCGGCGCg-GGUCGcACG-GcGUUGCGg -3'
miRNA:   3'- -CUGUCGUGgaCCAGC-UGCaC-CAACGC- -5'
14624 3' -55.8 NC_003521.1 + 108281 0.67 0.9322
Target:  5'- cGGCGGCACCgagGG-CgGugGUGGcgGUGa -3'
miRNA:   3'- -CUGUCGUGGa--CCaG-CugCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 113274 0.67 0.945985
Target:  5'- --gAGCACCUGGcCGACGgcg-UGCu -3'
miRNA:   3'- cugUCGUGGACCaGCUGCaccaACGc -5'
14624 3' -55.8 NC_003521.1 + 115434 0.67 0.941613
Target:  5'- cGCGGCGCggGGgUGACGgUGGUUGUGc -3'
miRNA:   3'- cUGUCGUGgaCCaGCUGC-ACCAACGC- -5'
14624 3' -55.8 NC_003521.1 + 116999 0.73 0.687865
Target:  5'- cGACaAGCAgCUGGUCGGCGUGacGgaGCGc -3'
miRNA:   3'- -CUG-UCGUgGACCAGCUGCAC--CaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 117716 0.72 0.755078
Target:  5'- gGACGauGCGCC--GUCGACGUGGgaGCGg -3'
miRNA:   3'- -CUGU--CGUGGacCAGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 118920 0.67 0.927155
Target:  5'- -uCGGCGCCg---CGGCGUGGgcgGCGg -3'
miRNA:   3'- cuGUCGUGGaccaGCUGCACCaa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 122850 0.75 0.549556
Target:  5'- uGACcGC-UCUGGUUGugGUGGUUGCu -3'
miRNA:   3'- -CUGuCGuGGACCAGCugCACCAACGc -5'
14624 3' -55.8 NC_003521.1 + 123208 0.67 0.937019
Target:  5'- uACGGCGCCgGGUagGACGgGGgcgGCGg -3'
miRNA:   3'- cUGUCGUGGaCCAg-CUGCaCCaa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 126729 0.68 0.892181
Target:  5'- aGGCGGCGC--GGUCGGCGacaUGGcUGCGu -3'
miRNA:   3'- -CUGUCGUGgaCCAGCUGC---ACCaACGC- -5'
14624 3' -55.8 NC_003521.1 + 148574 0.7 0.833744
Target:  5'- aGCGGCACCcagggagGGUCGACGggaUGGggGUa -3'
miRNA:   3'- cUGUCGUGGa------CCAGCUGC---ACCaaCGc -5'
14624 3' -55.8 NC_003521.1 + 162239 0.7 0.849514
Target:  5'- cGACGGCGCUggcggGGUgGGCGUcaacGGgggUGCGa -3'
miRNA:   3'- -CUGUCGUGGa----CCAgCUGCA----CCa--ACGC- -5'
14624 3' -55.8 NC_003521.1 + 166283 0.7 0.817283
Target:  5'- cACGGCGCggCUGGUCcGCGUGGccucgUUGCGu -3'
miRNA:   3'- cUGUCGUG--GACCAGcUGCACC-----AACGC- -5'
14624 3' -55.8 NC_003521.1 + 166672 0.67 0.941613
Target:  5'- aGCGGCACCUGGgcccCGUGGc-GCGc -3'
miRNA:   3'- cUGUCGUGGACCagcuGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 167367 0.68 0.907131
Target:  5'- cGACAGCugCUGGguacagauaucgagCGACGcgggcacgcuagUGGggGCGc -3'
miRNA:   3'- -CUGUCGugGACCa-------------GCUGC------------ACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 167709 0.66 0.957785
Target:  5'- uGCAGCACCUccguggccacGGUgGauuGCGUGGcgcUGCGg -3'
miRNA:   3'- cUGUCGUGGA----------CCAgC---UGCACCa--ACGC- -5'
14624 3' -55.8 NC_003521.1 + 168015 0.67 0.927155
Target:  5'- uGCuGCugCUGGUgGugGUaGGcgUGCGg -3'
miRNA:   3'- cUGuCGugGACCAgCugCA-CCa-ACGC- -5'
14624 3' -55.8 NC_003521.1 + 168134 0.72 0.755078
Target:  5'- cGACAGCGCCgugGGUgGACG-GG--GCGg -3'
miRNA:   3'- -CUGUCGUGGa--CCAgCUGCaCCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 170387 0.66 0.957785
Target:  5'- aACGGUACUguuagUGGUuacCGACGUGGUgacggGCa -3'
miRNA:   3'- cUGUCGUGG-----ACCA---GCUGCACCAa----CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.