miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 3' -55.8 NC_003521.1 + 1313 0.71 0.782517
Target:  5'- uACGGCGCC-GG-CGACGUGGc-GCGg -3'
miRNA:   3'- cUGUCGUGGaCCaGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 6053 0.67 0.950135
Target:  5'- gGGCGGUAgCgGGUCGACGaaGGgaaUGCGa -3'
miRNA:   3'- -CUGUCGUgGaCCAGCUGCa-CCa--ACGC- -5'
14624 3' -55.8 NC_003521.1 + 16411 0.74 0.598649
Target:  5'- cGCAGCGCCUGGcCGGCGaGGUguaccgGCu -3'
miRNA:   3'- cUGUCGUGGACCaGCUGCaCCAa-----CGc -5'
14624 3' -55.8 NC_003521.1 + 21760 0.66 0.957785
Target:  5'- uGCucauGCACCUGGgCGcCGUGGcgUGCc -3'
miRNA:   3'- cUGu---CGUGGACCaGCuGCACCa-ACGc -5'
14624 3' -55.8 NC_003521.1 + 22984 0.69 0.878775
Target:  5'- gGGCucuGCGCCUGGUUGACgGUGauaGCGg -3'
miRNA:   3'- -CUGu--CGUGGACCAGCUG-CACcaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 28837 0.7 0.825596
Target:  5'- uGCGGCGCCUGGaCGACGagc-UGCGg -3'
miRNA:   3'- cUGUCGUGGACCaGCUGCaccaACGC- -5'
14624 3' -55.8 NC_003521.1 + 30854 0.7 0.833744
Target:  5'- cGACGGCAgC-GGUUGGCGUuGUUGCu -3'
miRNA:   3'- -CUGUCGUgGaCCAGCUGCAcCAACGc -5'
14624 3' -55.8 NC_003521.1 + 31011 0.69 0.864539
Target:  5'- cGACGGCGCC-GGcgaggacgcguUCGugGUGGUgggggGUGg -3'
miRNA:   3'- -CUGUCGUGGaCC-----------AGCugCACCAa----CGC- -5'
14624 3' -55.8 NC_003521.1 + 34222 0.68 0.89476
Target:  5'- aGACGGCGCCcGuGUCGccgcagaggaucuugACGUGGUUGa- -3'
miRNA:   3'- -CUGUCGUGGaC-CAGC---------------UGCACCAACgc -5'
14624 3' -55.8 NC_003521.1 + 35924 0.69 0.878775
Target:  5'- gGugGGCGCCUGGUCcucaacgggGACGUaguguGGUugaccUGCGu -3'
miRNA:   3'- -CugUCGUGGACCAG---------CUGCA-----CCA-----ACGC- -5'
14624 3' -55.8 NC_003521.1 + 38989 0.69 0.871758
Target:  5'- cGCAGCACaggcgCUGGUgGAUGUGGcgcUGCa -3'
miRNA:   3'- cUGUCGUG-----GACCAgCUGCACCa--ACGc -5'
14624 3' -55.8 NC_003521.1 + 39832 0.67 0.941613
Target:  5'- cGAUGGCGCCUGcuuggccucCGGCGUGGggcUUGCa -3'
miRNA:   3'- -CUGUCGUGGACca-------GCUGCACC---AACGc -5'
14624 3' -55.8 NC_003521.1 + 50781 0.66 0.96459
Target:  5'- cGCGGCGguCCUGGUCGAuCGgcgacGGUgaugGCa -3'
miRNA:   3'- cUGUCGU--GGACCAGCU-GCa----CCAa---CGc -5'
14624 3' -55.8 NC_003521.1 + 58987 0.73 0.697664
Target:  5'- --aGGCACUggUGGUCGGCGUGGUagagguaGCGa -3'
miRNA:   3'- cugUCGUGG--ACCAGCUGCACCAa------CGC- -5'
14624 3' -55.8 NC_003521.1 + 70101 0.67 0.941613
Target:  5'- --gGGCACCUGGcCGGCGUGcc-GCc -3'
miRNA:   3'- cugUCGUGGACCaGCUGCACcaaCGc -5'
14624 3' -55.8 NC_003521.1 + 75884 0.68 0.91067
Target:  5'- --gAGCACCUGaucgaaguacuuGUCGGCGUGGauggGCa -3'
miRNA:   3'- cugUCGUGGAC------------CAGCUGCACCaa--CGc -5'
14624 3' -55.8 NC_003521.1 + 76330 0.66 0.961291
Target:  5'- cGACAGCugCggaGG-CGACGgugacGGcUGCGg -3'
miRNA:   3'- -CUGUCGugGa--CCaGCUGCa----CCaACGC- -5'
14624 3' -55.8 NC_003521.1 + 87725 0.67 0.937019
Target:  5'- cGCGcGCGCCcGG-CGGCGUGGUggGCc -3'
miRNA:   3'- cUGU-CGUGGaCCaGCUGCACCAa-CGc -5'
14624 3' -55.8 NC_003521.1 + 100802 0.66 0.96459
Target:  5'- aGAgGGuCGCCUGGgcugCGACuGUGauuGUUGCGc -3'
miRNA:   3'- -CUgUC-GUGGACCa---GCUG-CAC---CAACGC- -5'
14624 3' -55.8 NC_003521.1 + 102265 0.68 0.892181
Target:  5'- cGACAuGCugCUGa-CGACGUGGUUGa- -3'
miRNA:   3'- -CUGU-CGugGACcaGCUGCACCAACgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.