miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 3' -55.8 NC_003521.1 + 225128 1.1 0.004437
Target:  5'- cGACAGCACCUGGUCGACGUGGUUGCGg -3'
miRNA:   3'- -CUGUCGUGGACCAGCUGCACCAACGC- -5'
14624 3' -55.8 NC_003521.1 + 182360 0.83 0.220786
Target:  5'- uGGCAGaC-CCUGGUCGACGUGGUgcGCGg -3'
miRNA:   3'- -CUGUC-GuGGACCAGCUGCACCAa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 176793 0.76 0.492437
Target:  5'- -cCAGCACCUGGUCGAUGg---UGCGc -3'
miRNA:   3'- cuGUCGUGGACCAGCUGCaccaACGC- -5'
14624 3' -55.8 NC_003521.1 + 210417 0.76 0.530251
Target:  5'- cGCAGCG--UGGUCGGCGUGGgcgGCGa -3'
miRNA:   3'- cUGUCGUggACCAGCUGCACCaa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 122850 0.75 0.549556
Target:  5'- uGACcGC-UCUGGUUGugGUGGUUGCu -3'
miRNA:   3'- -CUGuCGuGGACCAGCugCACCAACGc -5'
14624 3' -55.8 NC_003521.1 + 16411 0.74 0.598649
Target:  5'- cGCAGCGCCUGGcCGGCGaGGUguaccgGCu -3'
miRNA:   3'- cUGUCGUGGACCaGCUGCaCCAa-----CGc -5'
14624 3' -55.8 NC_003521.1 + 116999 0.73 0.687865
Target:  5'- cGACaAGCAgCUGGUCGGCGUGacGgaGCGc -3'
miRNA:   3'- -CUG-UCGUgGACCAGCUGCAC--CaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 58987 0.73 0.697664
Target:  5'- --aGGCACUggUGGUCGGCGUGGUagagguaGCGa -3'
miRNA:   3'- cugUCGUGG--ACCAGCUGCACCAa------CGC- -5'
14624 3' -55.8 NC_003521.1 + 228233 0.73 0.697664
Target:  5'- --aGGUACgCUGGUCGugGUGGgUGCc -3'
miRNA:   3'- cugUCGUG-GACCAGCugCACCaACGc -5'
14624 3' -55.8 NC_003521.1 + 200396 0.72 0.736259
Target:  5'- cGCgAGCACCUGGcCGugGUGGacaGCa -3'
miRNA:   3'- cUG-UCGUGGACCaGCugCACCaa-CGc -5'
14624 3' -55.8 NC_003521.1 + 117716 0.72 0.755078
Target:  5'- gGACGauGCGCC--GUCGACGUGGgaGCGg -3'
miRNA:   3'- -CUGU--CGUGGacCAGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 168134 0.72 0.755078
Target:  5'- cGACAGCGCCgugGGUgGACG-GG--GCGg -3'
miRNA:   3'- -CUGUCGUGGa--CCAgCUGCaCCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 201541 0.71 0.782517
Target:  5'- uACGGCGCC-GG-CGACGUGGc-GCGg -3'
miRNA:   3'- cUGUCGUGGaCCaGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 1313 0.71 0.782517
Target:  5'- uACGGCGCC-GG-CGACGUGGc-GCGg -3'
miRNA:   3'- cUGUCGUGGaCCaGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 213734 0.7 0.817283
Target:  5'- aGACGGCGCCgcagaaGGcCGugGUGGcgGCc -3'
miRNA:   3'- -CUGUCGUGGa-----CCaGCugCACCaaCGc -5'
14624 3' -55.8 NC_003521.1 + 166283 0.7 0.817283
Target:  5'- cACGGCGCggCUGGUCcGCGUGGccucgUUGCGu -3'
miRNA:   3'- cUGUCGUG--GACCAGcUGCACC-----AACGC- -5'
14624 3' -55.8 NC_003521.1 + 28837 0.7 0.825596
Target:  5'- uGCGGCGCCUGGaCGACGagc-UGCGg -3'
miRNA:   3'- cUGUCGUGGACCaGCUGCaccaACGC- -5'
14624 3' -55.8 NC_003521.1 + 148574 0.7 0.833744
Target:  5'- aGCGGCACCcagggagGGUCGACGggaUGGggGUa -3'
miRNA:   3'- cUGUCGUGGa------CCAGCUGC---ACCaaCGc -5'
14624 3' -55.8 NC_003521.1 + 30854 0.7 0.833744
Target:  5'- cGACGGCAgC-GGUUGGCGUuGUUGCu -3'
miRNA:   3'- -CUGUCGUgGaCCAGCUGCAcCAACGc -5'
14624 3' -55.8 NC_003521.1 + 162239 0.7 0.849514
Target:  5'- cGACGGCGCUggcggGGUgGGCGUcaacGGgggUGCGa -3'
miRNA:   3'- -CUGUCGUGGa----CCAgCUGCA----CCa--ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.