miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 3' -55.8 NC_003521.1 + 212861 0.67 0.941613
Target:  5'- gGGCAGCGguaUGGUCGucguCGUGGacGCGg -3'
miRNA:   3'- -CUGUCGUgg-ACCAGCu---GCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 239217 0.69 0.871758
Target:  5'- cGCAGCACaggcgCUGGUgGAUGUGGcgcUGCa -3'
miRNA:   3'- cUGUCGUG-----GACCAgCUGCACCa--ACGc -5'
14624 3' -55.8 NC_003521.1 + 22984 0.69 0.878775
Target:  5'- gGGCucuGCGCCUGGUUGACgGUGauaGCGg -3'
miRNA:   3'- -CUGu--CGUGGACCAGCUG-CACcaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 34222 0.68 0.89476
Target:  5'- aGACGGCGCCcGuGUCGccgcagaggaucuugACGUGGUUGa- -3'
miRNA:   3'- -CUGUCGUGGaC-CAGC---------------UGCACCAACgc -5'
14624 3' -55.8 NC_003521.1 + 167367 0.68 0.907131
Target:  5'- cGACAGCugCUGGguacagauaucgagCGACGcgggcacgcuagUGGggGCGc -3'
miRNA:   3'- -CUGUCGugGACCa-------------GCUGC------------ACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 75884 0.68 0.91067
Target:  5'- --gAGCACCUGaucgaaguacuuGUCGGCGUGGauggGCa -3'
miRNA:   3'- cugUCGUGGAC------------CAGCUGCACCaa--CGc -5'
14624 3' -55.8 NC_003521.1 + 118920 0.67 0.927155
Target:  5'- -uCGGCGCCg---CGGCGUGGgcgGCGg -3'
miRNA:   3'- cuGUCGUGGaccaGCUGCACCaa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 213115 0.67 0.9322
Target:  5'- cGAC-GCGCUgGGUgUGGCGUGGU-GCGg -3'
miRNA:   3'- -CUGuCGUGGaCCA-GCUGCACCAaCGC- -5'
14624 3' -55.8 NC_003521.1 + 70101 0.67 0.941613
Target:  5'- --gGGCACCUGGcCGGCGUGcc-GCc -3'
miRNA:   3'- cugUCGUGGACCaGCUGCACcaaCGc -5'
14624 3' -55.8 NC_003521.1 + 31011 0.69 0.864539
Target:  5'- cGACGGCGCC-GGcgaggacgcguUCGugGUGGUgggggGUGg -3'
miRNA:   3'- -CUGUCGUGGaCC-----------AGCugCACCAa----CGC- -5'
14624 3' -55.8 NC_003521.1 + 172546 0.69 0.864539
Target:  5'- -cCAGCACCUGGUgGAUGcUGGggaUGUu -3'
miRNA:   3'- cuGUCGUGGACCAgCUGC-ACCa--ACGc -5'
14624 3' -55.8 NC_003521.1 + 30854 0.7 0.833744
Target:  5'- cGACGGCAgC-GGUUGGCGUuGUUGCu -3'
miRNA:   3'- -CUGUCGUgGaCCAGCUGCAcCAACGc -5'
14624 3' -55.8 NC_003521.1 + 122850 0.75 0.549556
Target:  5'- uGACcGC-UCUGGUUGugGUGGUUGCu -3'
miRNA:   3'- -CUGuCGuGGACCAGCugCACCAACGc -5'
14624 3' -55.8 NC_003521.1 + 116999 0.73 0.687865
Target:  5'- cGACaAGCAgCUGGUCGGCGUGacGgaGCGc -3'
miRNA:   3'- -CUG-UCGUgGACCAGCUGCAC--CaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 58987 0.73 0.697664
Target:  5'- --aGGCACUggUGGUCGGCGUGGUagagguaGCGa -3'
miRNA:   3'- cugUCGUGG--ACCAGCUGCACCAa------CGC- -5'
14624 3' -55.8 NC_003521.1 + 117716 0.72 0.755078
Target:  5'- gGACGauGCGCC--GUCGACGUGGgaGCGg -3'
miRNA:   3'- -CUGU--CGUGGacCAGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 201541 0.71 0.782517
Target:  5'- uACGGCGCC-GG-CGACGUGGc-GCGg -3'
miRNA:   3'- cUGUCGUGGaCCaGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 166283 0.7 0.817283
Target:  5'- cACGGCGCggCUGGUCcGCGUGGccucgUUGCGu -3'
miRNA:   3'- cUGUCGUG--GACCAGcUGCACC-----AACGC- -5'
14624 3' -55.8 NC_003521.1 + 213734 0.7 0.817283
Target:  5'- aGACGGCGCCgcagaaGGcCGugGUGGcgGCc -3'
miRNA:   3'- -CUGUCGUGGa-----CCaGCugCACCaaCGc -5'
14624 3' -55.8 NC_003521.1 + 28837 0.7 0.825596
Target:  5'- uGCGGCGCCUGGaCGACGagc-UGCGg -3'
miRNA:   3'- cUGUCGUGGACCaGCUGCaccaACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.