miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 3' -55.8 NC_003521.1 + 240059 0.67 0.941613
Target:  5'- cGAUGGCGCCUGcuuggccucCGGCGUGGggcUUGCa -3'
miRNA:   3'- -CUGUCGUGGACca-------GCUGCACC---AACGc -5'
14624 3' -55.8 NC_003521.1 + 239217 0.69 0.871758
Target:  5'- cGCAGCACaggcgCUGGUgGAUGUGGcgcUGCa -3'
miRNA:   3'- cUGUCGUG-----GACCAgCUGCACCa--ACGc -5'
14624 3' -55.8 NC_003521.1 + 228233 0.73 0.697664
Target:  5'- --aGGUACgCUGGUCGugGUGGgUGCc -3'
miRNA:   3'- cugUCGUG-GACCAGCugCACCaACGc -5'
14624 3' -55.8 NC_003521.1 + 225128 1.1 0.004437
Target:  5'- cGACAGCACCUGGUCGACGUGGUUGCGg -3'
miRNA:   3'- -CUGUCGUGGACCAGCUGCACCAACGC- -5'
14624 3' -55.8 NC_003521.1 + 213734 0.7 0.817283
Target:  5'- aGACGGCGCCgcagaaGGcCGugGUGGcgGCc -3'
miRNA:   3'- -CUGUCGUGGa-----CCaGCugCACCaaCGc -5'
14624 3' -55.8 NC_003521.1 + 213115 0.67 0.9322
Target:  5'- cGAC-GCGCUgGGUgUGGCGUGGU-GCGg -3'
miRNA:   3'- -CUGuCGUGGaCCA-GCUGCACCAaCGC- -5'
14624 3' -55.8 NC_003521.1 + 212861 0.67 0.941613
Target:  5'- gGGCAGCGguaUGGUCGucguCGUGGacGCGg -3'
miRNA:   3'- -CUGUCGUgg-ACCAGCu---GCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 210417 0.76 0.530251
Target:  5'- cGCAGCG--UGGUCGGCGUGGgcgGCGa -3'
miRNA:   3'- cUGUCGUggACCAGCUGCACCaa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 207943 0.68 0.921886
Target:  5'- cGGCAGCACC-GG-CGGCGcGGgcGCc -3'
miRNA:   3'- -CUGUCGUGGaCCaGCUGCaCCaaCGc -5'
14624 3' -55.8 NC_003521.1 + 206058 0.68 0.91639
Target:  5'- cGACAuGCACCUcaUCGGCGUGGUcuCGu -3'
miRNA:   3'- -CUGU-CGUGGAccAGCUGCACCAacGC- -5'
14624 3' -55.8 NC_003521.1 + 201541 0.71 0.782517
Target:  5'- uACGGCGCC-GG-CGACGUGGc-GCGg -3'
miRNA:   3'- cUGUCGUGGaCCaGCUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 200396 0.72 0.736259
Target:  5'- cGCgAGCACCUGGcCGugGUGGacaGCa -3'
miRNA:   3'- cUG-UCGUGGACCaGCugCACCaa-CGc -5'
14624 3' -55.8 NC_003521.1 + 197271 0.67 0.937019
Target:  5'- cGCGGCGCC-GG-CGGCG-GGgaGCGg -3'
miRNA:   3'- cUGUCGUGGaCCaGCUGCaCCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 196939 0.68 0.91639
Target:  5'- cGGCAGCACC-GGUa-GCGUGG--GCGa -3'
miRNA:   3'- -CUGUCGUGGaCCAgcUGCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 187808 0.67 0.945985
Target:  5'- cGGCGGCgACCUGGguugggaguUUGugGUGGc-GCGa -3'
miRNA:   3'- -CUGUCG-UGGACC---------AGCugCACCaaCGC- -5'
14624 3' -55.8 NC_003521.1 + 186765 0.67 0.927155
Target:  5'- cGGCGGCAUCggcGGaggCGGCGgUGGUgGCGg -3'
miRNA:   3'- -CUGUCGUGGa--CCa--GCUGC-ACCAaCGC- -5'
14624 3' -55.8 NC_003521.1 + 184851 0.68 0.892181
Target:  5'- uGCGGCcCCUGcacaUCGGCGUGGUgggGCu -3'
miRNA:   3'- cUGUCGuGGACc---AGCUGCACCAa--CGc -5'
14624 3' -55.8 NC_003521.1 + 182360 0.83 0.220786
Target:  5'- uGGCAGaC-CCUGGUCGACGUGGUgcGCGg -3'
miRNA:   3'- -CUGUC-GuGGACCAGCUGCACCAa-CGC- -5'
14624 3' -55.8 NC_003521.1 + 176793 0.76 0.492437
Target:  5'- -cCAGCACCUGGUCGAUGg---UGCGc -3'
miRNA:   3'- cuGUCGUGGACCAGCUGCaccaACGC- -5'
14624 3' -55.8 NC_003521.1 + 172546 0.69 0.864539
Target:  5'- -cCAGCACCUGGUgGAUGcUGGggaUGUu -3'
miRNA:   3'- cuGUCGUGGACCAgCUGC-ACCa--ACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.