miRNA display CGI


Results 61 - 80 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 166124 0.67 0.767524
Target:  5'- aGC-CGCUGCCgCGGCGCcgccGUcGCUGCu -3'
miRNA:   3'- gCGcGUGGUGGaGCCGCGa---CA-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 164440 0.66 0.810592
Target:  5'- aGCaGCGCCACCgCGGCcGCggccGUcacggucgccGCUGCc -3'
miRNA:   3'- gCG-CGUGGUGGaGCCG-CGa---CA----------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 163641 0.75 0.345725
Target:  5'- uCGUGCGg-GCCUCGGUGCgcgucucgGUGCUGCg -3'
miRNA:   3'- -GCGCGUggUGGAGCCGCGa-------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 162702 0.67 0.767524
Target:  5'- aCGCGC-CCACCaaGGUGUacaucucggGCUGCg -3'
miRNA:   3'- -GCGCGuGGUGGagCCGCGaca------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 162431 0.66 0.805597
Target:  5'- aCGCGCuuucgguuuccaguCCGCCUCGGCGgUGUuccuccuccgGCUu- -3'
miRNA:   3'- -GCGCGu-------------GGUGGAGCCGCgACA----------CGAcg -5'
14624 5' -60.4 NC_003521.1 + 161593 0.71 0.565497
Target:  5'- cCGCGCuACCGcgggcaucuggugcCCUCGG-GCaacGUGCUGCg -3'
miRNA:   3'- -GCGCG-UGGU--------------GGAGCCgCGa--CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 160774 0.66 0.826859
Target:  5'- gCGCGUGCCGCCggCGGCacGCgg-GC-GCg -3'
miRNA:   3'- -GCGCGUGGUGGa-GCCG--CGacaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 157982 0.69 0.683887
Target:  5'- aGCGaCGCCGCCgcccgCGGCGauuUGUGUauauagcgUGCg -3'
miRNA:   3'- gCGC-GUGGUGGa----GCCGCg--ACACG--------ACG- -5'
14624 5' -60.4 NC_003521.1 + 156604 0.74 0.37578
Target:  5'- uGCaGCGCgGCCUCucGCGCcugGUGCUGCg -3'
miRNA:   3'- gCG-CGUGgUGGAGc-CGCGa--CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 156145 0.68 0.740333
Target:  5'- uGUGCACgCAgCUgcUGGCGC--UGCUGCg -3'
miRNA:   3'- gCGCGUG-GUgGA--GCCGCGacACGACG- -5'
14624 5' -60.4 NC_003521.1 + 155946 0.66 0.802239
Target:  5'- uCGCGcCACCcggACCgggCGGC-CUucuaccguacgGUGCUGCg -3'
miRNA:   3'- -GCGC-GUGG---UGGa--GCCGcGA-----------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 155561 0.67 0.767524
Target:  5'- --aGCGCCugCgacCGGCGCaggagGUGgUGCa -3'
miRNA:   3'- gcgCGUGGugGa--GCCGCGa----CACgACG- -5'
14624 5' -60.4 NC_003521.1 + 155414 0.7 0.587488
Target:  5'- aGCGCGCCuACCa-GGaGCUGUGCgaGCu -3'
miRNA:   3'- gCGCGUGG-UGGagCCgCGACACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 155149 0.67 0.757655
Target:  5'- gCGCGUgcuggacGCCGgCUCGGaacaGCUGgcggccgcgGCUGCc -3'
miRNA:   3'- -GCGCG-------UGGUgGAGCCg---CGACa--------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 155068 0.67 0.779894
Target:  5'- gGCGCugGCCACCUCGcucauggccaaguuCGCgGcGCUGCa -3'
miRNA:   3'- gCGCG--UGGUGGAGCc-------------GCGaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 154945 0.67 0.785127
Target:  5'- aCGCGCcuCUACCgCGaGCGCcugGUGCccUGCa -3'
miRNA:   3'- -GCGCGu-GGUGGaGC-CGCGa--CACG--ACG- -5'
14624 5' -60.4 NC_003521.1 + 154019 0.67 0.793747
Target:  5'- uCGCGCAgCACCU-GGUGCaUGcucuUGCcGCg -3'
miRNA:   3'- -GCGCGUgGUGGAgCCGCG-AC----ACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 153632 0.66 0.802239
Target:  5'- -cUGCGCCAgcgggugcgUCUCGGUGgaGcGCUGCa -3'
miRNA:   3'- gcGCGUGGU---------GGAGCCGCgaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 153500 0.75 0.353075
Target:  5'- gCGCaGCugCGCCUCcaGGCGCUc-GCUGCg -3'
miRNA:   3'- -GCG-CGugGUGGAG--CCGCGAcaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 152794 0.72 0.493809
Target:  5'- uGCGCACCGCCUCGGUcaccgGCagGUGgUacaGCu -3'
miRNA:   3'- gCGCGUGGUGGAGCCG-----CGa-CACgA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.