miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 184724 0.76 0.297381
Target:  5'- aCGCGaCGCUACUUCGaucuGCGC-GUGCUGCg -3'
miRNA:   3'- -GCGC-GUGGUGGAGC----CGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 183904 0.67 0.785127
Target:  5'- aGC-CACgGCCgucaCGGCGCUGUaccGgUGCa -3'
miRNA:   3'- gCGcGUGgUGGa---GCCGCGACA---CgACG- -5'
14624 5' -60.4 NC_003521.1 + 183424 0.68 0.731091
Target:  5'- gGCG-ACCGCa-CGGCGCUGUGgC-GCg -3'
miRNA:   3'- gCGCgUGGUGgaGCCGCGACAC-GaCG- -5'
14624 5' -60.4 NC_003521.1 + 182054 0.68 0.701988
Target:  5'- gCGCGCGCCGCCcugcagUGGCuggaccucagcccGCaGUgGCUGCu -3'
miRNA:   3'- -GCGCGUGGUGGa-----GCCG-------------CGaCA-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 181474 0.71 0.558844
Target:  5'- gGCGCGCCGCCUgcagcgUGGCGUg--GCUcaGCa -3'
miRNA:   3'- gCGCGUGGUGGA------GCCGCGacaCGA--CG- -5'
14624 5' -60.4 NC_003521.1 + 181250 0.66 0.827656
Target:  5'- gGCGCGCUucucggacgaaACCcccgCGGCGcCggacgcgggaaagggGUGCUGCg -3'
miRNA:   3'- gCGCGUGG-----------UGGa---GCCGC-Ga--------------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 180149 0.66 0.842493
Target:  5'- aGCaGCGCCACCUCGuCGUccGUGaaGCc -3'
miRNA:   3'- gCG-CGUGGUGGAGCcGCGa-CACgaCG- -5'
14624 5' -60.4 NC_003521.1 + 177589 0.67 0.785127
Target:  5'- gGCgGCGCCGCCgguucCGGCcGUUccGCUGCc -3'
miRNA:   3'- gCG-CGUGGUGGa----GCCG-CGAcaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 176955 0.7 0.626055
Target:  5'- gGCGCGCCGCCUCGuCcacCUGUGUcaggGCc -3'
miRNA:   3'- gCGCGUGGUGGAGCcGc--GACACGa---CG- -5'
14624 5' -60.4 NC_003521.1 + 171525 0.67 0.767524
Target:  5'- aCG-GCGCCGCCcugugUCGGgGCUGcgcGCUGg -3'
miRNA:   3'- -GCgCGUGGUGG-----AGCCgCGACa--CGACg -5'
14624 5' -60.4 NC_003521.1 + 170508 0.72 0.502904
Target:  5'- gGCGuCACCGCCUCGcUGCUGggcgacCUGCa -3'
miRNA:   3'- gCGC-GUGGUGGAGCcGCGACac----GACG- -5'
14624 5' -60.4 NC_003521.1 + 170017 0.68 0.702936
Target:  5'- uGCuGCGCCuCUUCGGgcCGCUGUGCg-- -3'
miRNA:   3'- gCG-CGUGGuGGAGCC--GCGACACGacg -5'
14624 5' -60.4 NC_003521.1 + 169055 0.68 0.740333
Target:  5'- gGCGCGCCACgUCGGagaGUUuaacGUGCUc- -3'
miRNA:   3'- gCGCGUGGUGgAGCCg--CGA----CACGAcg -5'
14624 5' -60.4 NC_003521.1 + 168620 0.69 0.674301
Target:  5'- gCGUGCGCCAUCU--GCuGUUGcUGCUGCg -3'
miRNA:   3'- -GCGCGUGGUGGAgcCG-CGAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 168541 0.73 0.432455
Target:  5'- gGCcaGCGCgGCggCGGCGCUGgcggGCUGCg -3'
miRNA:   3'- gCG--CGUGgUGgaGCCGCGACa---CGACG- -5'
14624 5' -60.4 NC_003521.1 + 168318 0.71 0.530606
Target:  5'- gGCGCGCCACCUCcuCGaagaUGUGCUuGUa -3'
miRNA:   3'- gCGCGUGGUGGAGccGCg---ACACGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 167986 0.67 0.793747
Target:  5'- uCGcCGCGCCcagGCCgucgCGGUGagcCUGcUGCUGCu -3'
miRNA:   3'- -GC-GCGUGG---UGGa---GCCGC---GAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 167464 0.66 0.834758
Target:  5'- aGCGUGCUgaggGCCgugcgCGGCGCguaGUUGCa -3'
miRNA:   3'- gCGCGUGG----UGGa----GCCGCGacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 166642 0.68 0.731091
Target:  5'- cCGCGCGCCgggcGCCgCGGCGCa--GCgGCc -3'
miRNA:   3'- -GCGCGUGG----UGGaGCCGCGacaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 166198 0.76 0.284568
Target:  5'- cCGCGCACCACCccgcugUUGGCGCg--GCgGCg -3'
miRNA:   3'- -GCGCGUGGUGG------AGCCGCGacaCGaCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.