Results 41 - 60 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14624 | 5' | -60.4 | NC_003521.1 | + | 184724 | 0.76 | 0.297381 |
Target: 5'- aCGCGaCGCUACUUCGaucuGCGC-GUGCUGCg -3' miRNA: 3'- -GCGC-GUGGUGGAGC----CGCGaCACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 183904 | 0.67 | 0.785127 |
Target: 5'- aGC-CACgGCCgucaCGGCGCUGUaccGgUGCa -3' miRNA: 3'- gCGcGUGgUGGa---GCCGCGACA---CgACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 183424 | 0.68 | 0.731091 |
Target: 5'- gGCG-ACCGCa-CGGCGCUGUGgC-GCg -3' miRNA: 3'- gCGCgUGGUGgaGCCGCGACAC-GaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 182054 | 0.68 | 0.701988 |
Target: 5'- gCGCGCGCCGCCcugcagUGGCuggaccucagcccGCaGUgGCUGCu -3' miRNA: 3'- -GCGCGUGGUGGa-----GCCG-------------CGaCA-CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 181474 | 0.71 | 0.558844 |
Target: 5'- gGCGCGCCGCCUgcagcgUGGCGUg--GCUcaGCa -3' miRNA: 3'- gCGCGUGGUGGA------GCCGCGacaCGA--CG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 181250 | 0.66 | 0.827656 |
Target: 5'- gGCGCGCUucucggacgaaACCcccgCGGCGcCggacgcgggaaagggGUGCUGCg -3' miRNA: 3'- gCGCGUGG-----------UGGa---GCCGC-Ga--------------CACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 180149 | 0.66 | 0.842493 |
Target: 5'- aGCaGCGCCACCUCGuCGUccGUGaaGCc -3' miRNA: 3'- gCG-CGUGGUGGAGCcGCGa-CACgaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 177589 | 0.67 | 0.785127 |
Target: 5'- gGCgGCGCCGCCgguucCGGCcGUUccGCUGCc -3' miRNA: 3'- gCG-CGUGGUGGa----GCCG-CGAcaCGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 176955 | 0.7 | 0.626055 |
Target: 5'- gGCGCGCCGCCUCGuCcacCUGUGUcaggGCc -3' miRNA: 3'- gCGCGUGGUGGAGCcGc--GACACGa---CG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 171525 | 0.67 | 0.767524 |
Target: 5'- aCG-GCGCCGCCcugugUCGGgGCUGcgcGCUGg -3' miRNA: 3'- -GCgCGUGGUGG-----AGCCgCGACa--CGACg -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 170508 | 0.72 | 0.502904 |
Target: 5'- gGCGuCACCGCCUCGcUGCUGggcgacCUGCa -3' miRNA: 3'- gCGC-GUGGUGGAGCcGCGACac----GACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 170017 | 0.68 | 0.702936 |
Target: 5'- uGCuGCGCCuCUUCGGgcCGCUGUGCg-- -3' miRNA: 3'- gCG-CGUGGuGGAGCC--GCGACACGacg -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 169055 | 0.68 | 0.740333 |
Target: 5'- gGCGCGCCACgUCGGagaGUUuaacGUGCUc- -3' miRNA: 3'- gCGCGUGGUGgAGCCg--CGA----CACGAcg -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 168620 | 0.69 | 0.674301 |
Target: 5'- gCGUGCGCCAUCU--GCuGUUGcUGCUGCg -3' miRNA: 3'- -GCGCGUGGUGGAgcCG-CGAC-ACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 168541 | 0.73 | 0.432455 |
Target: 5'- gGCcaGCGCgGCggCGGCGCUGgcggGCUGCg -3' miRNA: 3'- gCG--CGUGgUGgaGCCGCGACa---CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 168318 | 0.71 | 0.530606 |
Target: 5'- gGCGCGCCACCUCcuCGaagaUGUGCUuGUa -3' miRNA: 3'- gCGCGUGGUGGAGccGCg---ACACGA-CG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 167986 | 0.67 | 0.793747 |
Target: 5'- uCGcCGCGCCcagGCCgucgCGGUGagcCUGcUGCUGCu -3' miRNA: 3'- -GC-GCGUGG---UGGa---GCCGC---GAC-ACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 167464 | 0.66 | 0.834758 |
Target: 5'- aGCGUGCUgaggGCCgugcgCGGCGCguaGUUGCa -3' miRNA: 3'- gCGCGUGG----UGGa----GCCGCGacaCGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 166642 | 0.68 | 0.731091 |
Target: 5'- cCGCGCGCCgggcGCCgCGGCGCa--GCgGCc -3' miRNA: 3'- -GCGCGUGG----UGGaGCCGCGacaCGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 166198 | 0.76 | 0.284568 |
Target: 5'- cCGCGCACCACCccgcugUUGGCGCg--GCgGCg -3' miRNA: 3'- -GCGCGUGGUGG------AGCCGCGacaCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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