miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 1602 0.72 0.484791
Target:  5'- aGCGCcacauCCACCa--GCGcCUGUGCUGCg -3'
miRNA:   3'- gCGCGu----GGUGGagcCGC-GACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 201829 0.72 0.484791
Target:  5'- aGCGCcacauCCACCa--GCGcCUGUGCUGCg -3'
miRNA:   3'- gCGCGu----GGUGGagcCGC-GACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 125799 0.72 0.484791
Target:  5'- aGCGCACUACCaacUCcaCGCUGUGgaGCa -3'
miRNA:   3'- gCGCGUGGUGG---AGccGCGACACgaCG- -5'
14624 5' -60.4 NC_003521.1 + 74337 0.72 0.493809
Target:  5'- gGCGCcCCGCUggaUGGCGCUGcUGCgcgGCu -3'
miRNA:   3'- gCGCGuGGUGGa--GCCGCGAC-ACGa--CG- -5'
14624 5' -60.4 NC_003521.1 + 64031 0.72 0.493809
Target:  5'- aGCGCACCAUCgaccaGGUGCUGgaGgUGCu -3'
miRNA:   3'- gCGCGUGGUGGag---CCGCGACa-CgACG- -5'
14624 5' -60.4 NC_003521.1 + 152794 0.72 0.493809
Target:  5'- uGCGCACCGCCUCGGUcaccgGCagGUGgUacaGCu -3'
miRNA:   3'- gCGCGUGGUGGAGCCG-----CGa-CACgA---CG- -5'
14624 5' -60.4 NC_003521.1 + 43153 0.72 0.493809
Target:  5'- gGUGCACgCGCUggUGGCGCUGcUGCcGCa -3'
miRNA:   3'- gCGCGUG-GUGGa-GCCGCGAC-ACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 120678 0.72 0.497438
Target:  5'- uGCGCAccuCCguggaggugagccgcACCUCGGUGCUGUGCc-- -3'
miRNA:   3'- gCGCGU---GG---------------UGGAGCCGCGACACGacg -5'
14624 5' -60.4 NC_003521.1 + 127307 0.72 0.502904
Target:  5'- gGCGCGCCucgAUgUUGGCGUUGgucagcgGCUGCc -3'
miRNA:   3'- gCGCGUGG---UGgAGCCGCGACa------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 170508 0.72 0.502904
Target:  5'- gGCGuCACCGCCUCGcUGCUGggcgacCUGCa -3'
miRNA:   3'- gCGC-GUGGUGGAGCcGCGACac----GACG- -5'
14624 5' -60.4 NC_003521.1 + 120859 0.72 0.512071
Target:  5'- uCGaCGC-CCAUCUCGGUGCUGgccuucgGaCUGCc -3'
miRNA:   3'- -GC-GCGuGGUGGAGCCGCGACa------C-GACG- -5'
14624 5' -60.4 NC_003521.1 + 26276 0.72 0.512071
Target:  5'- --aGCugCACCcCGGUGCUgGUGCUGg -3'
miRNA:   3'- gcgCGugGUGGaGCCGCGA-CACGACg -5'
14624 5' -60.4 NC_003521.1 + 168318 0.71 0.530606
Target:  5'- gGCGCGCCACCUCcuCGaagaUGUGCUuGUa -3'
miRNA:   3'- gCGCGUGGUGGAGccGCg---ACACGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 112778 0.71 0.530606
Target:  5'- gCGCGUcgGCCACUUcuaccgcgugCGGCGCgagGUGCcGCg -3'
miRNA:   3'- -GCGCG--UGGUGGA----------GCCGCGa--CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 137994 0.71 0.530606
Target:  5'- cCGCGCGCaggucgAUCUCGGCGUcgagGUGCgcgUGCg -3'
miRNA:   3'- -GCGCGUGg-----UGGAGCCGCGa---CACG---ACG- -5'
14624 5' -60.4 NC_003521.1 + 149960 0.71 0.530606
Target:  5'- uGCGCGCUucGCgUUGGCaCUGUGCcGCg -3'
miRNA:   3'- gCGCGUGG--UGgAGCCGcGACACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 26426 0.71 0.539965
Target:  5'- aGCGCcauucUCACCUgGGCGCUGUucgugGcCUGCa -3'
miRNA:   3'- gCGCGu----GGUGGAgCCGCGACA-----C-GACG- -5'
14624 5' -60.4 NC_003521.1 + 44342 0.71 0.539965
Target:  5'- aGCuGCACCGCauccgCGacGCGCUGggGCUGCg -3'
miRNA:   3'- gCG-CGUGGUGga---GC--CGCGACa-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 181474 0.71 0.558844
Target:  5'- gGCGCGCCGCCUgcagcgUGGCGUg--GCUcaGCa -3'
miRNA:   3'- gCGCGUGGUGGA------GCCGCGacaCGA--CG- -5'
14624 5' -60.4 NC_003521.1 + 161593 0.71 0.565497
Target:  5'- cCGCGCuACCGcgggcaucuggugcCCUCGG-GCaacGUGCUGCg -3'
miRNA:   3'- -GCGCG-UGGU--------------GGAGCCgCGa--CACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.