miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 181250 0.66 0.827656
Target:  5'- gGCGCGCUucucggacgaaACCcccgCGGCGcCggacgcgggaaagggGUGCUGCg -3'
miRNA:   3'- gCGCGUGG-----------UGGa---GCCGC-Ga--------------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 97486 0.66 0.802239
Target:  5'- cCGCGaGCCGCCaUCGGUGgCg--GCUGUc -3'
miRNA:   3'- -GCGCgUGGUGG-AGCCGC-GacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 207239 0.66 0.810592
Target:  5'- gGUGCGCgACCagaagaucuacCGGCGCUucucGUGcCUGCg -3'
miRNA:   3'- gCGCGUGgUGGa----------GCCGCGA----CAC-GACG- -5'
14624 5' -60.4 NC_003521.1 + 21934 0.66 0.842493
Target:  5'- gGCGgGCgGCCUCGG-GCUGgaGCaguggGCg -3'
miRNA:   3'- gCGCgUGgUGGAGCCgCGACa-CGa----CG- -5'
14624 5' -60.4 NC_003521.1 + 213964 0.66 0.802239
Target:  5'- uGgGCGCCGgCUCGG-GCcGUGCUa- -3'
miRNA:   3'- gCgCGUGGUgGAGCCgCGaCACGAcg -5'
14624 5' -60.4 NC_003521.1 + 115538 0.66 0.802239
Target:  5'- aCGaCGCGgcUCGCCUgaCGgaGCGCcGUGCUGCg -3'
miRNA:   3'- -GC-GCGU--GGUGGA--GC--CGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 213377 0.66 0.826859
Target:  5'- gGCGCucACgGCCgaauUCGGC-CUGgGCUGCc -3'
miRNA:   3'- gCGCG--UGgUGG----AGCCGcGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 155946 0.66 0.802239
Target:  5'- uCGCGcCACCcggACCgggCGGC-CUucuaccguacgGUGCUGCg -3'
miRNA:   3'- -GCGC-GUGG---UGGa--GCCGcGA-----------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 95829 0.66 0.842493
Target:  5'- gCGCGCGagGCCUCGGUGgcaUGccGCUGg -3'
miRNA:   3'- -GCGCGUggUGGAGCCGCg--ACa-CGACg -5'
14624 5' -60.4 NC_003521.1 + 29190 0.66 0.805597
Target:  5'- gGCGUACUAUCgguacgaCGGCGgUGUcagcgaagacaucccGCUGCa -3'
miRNA:   3'- gCGCGUGGUGGa------GCCGCgACA---------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 18319 0.66 0.818801
Target:  5'- uCGUGC-CCAg--CGGCGUgGUGCUGUu -3'
miRNA:   3'- -GCGCGuGGUggaGCCGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 20727 0.66 0.826859
Target:  5'- -cCGUACCGCUggCGGUGCaucaGCUGCg -3'
miRNA:   3'- gcGCGUGGUGGa-GCCGCGaca-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 75167 0.66 0.826859
Target:  5'- aCGCaugGUGCCAgCgCGGCGUgcUGCUGCu -3'
miRNA:   3'- -GCG---CGUGGUgGaGCCGCGacACGACG- -5'
14624 5' -60.4 NC_003521.1 + 122521 0.66 0.818801
Target:  5'- gGCGgGCagGCCggCGGCGgUgguaGUGCUGCu -3'
miRNA:   3'- gCGCgUGg-UGGa-GCCGCgA----CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 225505 0.67 0.758558
Target:  5'- gCGCGCugAUCACCcgcUCGGCGCcGUcGC-GCg -3'
miRNA:   3'- -GCGCG--UGGUGG---AGCCGCGaCA-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 143595 0.67 0.758558
Target:  5'- cCGCGgACUGCUgacggccacCGGCuGCUGccUGCUGCa -3'
miRNA:   3'- -GCGCgUGGUGGa--------GCCG-CGAC--ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 197595 0.67 0.749491
Target:  5'- aGCGCGCC-CaaugugCGGCGUcugGUGCaGCa -3'
miRNA:   3'- gCGCGUGGuGga----GCCGCGa--CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 89029 0.67 0.753129
Target:  5'- aCGUGCcgGCCACCUUcaugcuguaccugcaGGCGCgccacaGCUGCc -3'
miRNA:   3'- -GCGCG--UGGUGGAG---------------CCGCGaca---CGACG- -5'
14624 5' -60.4 NC_003521.1 + 137471 0.67 0.753129
Target:  5'- gCGUGCACUacgucuaccuggccuACCgcaCGGCGCUG-GC-GCg -3'
miRNA:   3'- -GCGCGUGG---------------UGGa--GCCGCGACaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 202552 0.67 0.793747
Target:  5'- uGCGCGCCgGCCUCcuggGGCuGCUGacccuggGCcGCg -3'
miRNA:   3'- gCGCGUGG-UGGAG----CCG-CGACa------CGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.