miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 164440 0.66 0.810592
Target:  5'- aGCaGCGCCACCgCGGCcGCggccGUcacggucgccGCUGCc -3'
miRNA:   3'- gCG-CGUGGUGGaGCCG-CGa---CA----------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 141440 0.66 0.810592
Target:  5'- uCGCuGgACCGCCUCagagaGGUGCUgcagGUGgUGCg -3'
miRNA:   3'- -GCG-CgUGGUGGAG-----CCGCGA----CACgACG- -5'
14624 5' -60.4 NC_003521.1 + 36285 0.66 0.826859
Target:  5'- gGCGCuGCgCACCUCGGacCGCgacaacuacggGcGCUGCg -3'
miRNA:   3'- gCGCG-UG-GUGGAGCC--GCGa----------CaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 123942 0.66 0.818801
Target:  5'- gGCGCGCCGCCgcagCcGCGCca--CUGCg -3'
miRNA:   3'- gCGCGUGGUGGa---GcCGCGacacGACG- -5'
14624 5' -60.4 NC_003521.1 + 122845 0.66 0.802239
Target:  5'- uCGCGCAgCuCgUCGuaGCGCUgGUGCUGg -3'
miRNA:   3'- -GCGCGUgGuGgAGC--CGCGA-CACGACg -5'
14624 5' -60.4 NC_003521.1 + 14460 0.66 0.802239
Target:  5'- gGCGUcaGCCGCCgcucccgCGGCGCUacccGCgggGCg -3'
miRNA:   3'- gCGCG--UGGUGGa------GCCGCGAca--CGa--CG- -5'
14624 5' -60.4 NC_003521.1 + 116285 0.66 0.817987
Target:  5'- aCGUGCGCaAgCU-GGCGCUGgaggacagcuccaUGCUGCu -3'
miRNA:   3'- -GCGCGUGgUgGAgCCGCGAC-------------ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 72282 0.66 0.802239
Target:  5'- cCGCcaGCGCCGCCgccGCGCUG-GCcGCc -3'
miRNA:   3'- -GCG--CGUGGUGGagcCGCGACaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 115538 0.66 0.802239
Target:  5'- aCGaCGCGgcUCGCCUgaCGgaGCGCcGUGCUGCg -3'
miRNA:   3'- -GC-GCGU--GGUGGA--GC--CGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 87448 0.66 0.810592
Target:  5'- -cUGCGCUACgaCGG-GCUGUGCcgGCa -3'
miRNA:   3'- gcGCGUGGUGgaGCCgCGACACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 28763 0.66 0.826859
Target:  5'- cCGCGcCACCGCCcuaGCGCUGcacuuuCUGCg -3'
miRNA:   3'- -GCGC-GUGGUGGagcCGCGACac----GACG- -5'
14624 5' -60.4 NC_003521.1 + 114048 0.66 0.813893
Target:  5'- aCGCGCAgCGCCagGGC-CUGccggacuucacgucGCUGCa -3'
miRNA:   3'- -GCGCGUgGUGGagCCGcGACa-------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 33259 0.66 0.810592
Target:  5'- aCGCGCAgCAggcCGGCGCgaucGUGCaGCa -3'
miRNA:   3'- -GCGCGUgGUggaGCCGCGa---CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 162431 0.66 0.805597
Target:  5'- aCGCGCuuucgguuuccaguCCGCCUCGGCGgUGUuccuccuccgGCUu- -3'
miRNA:   3'- -GCGCGu-------------GGUGGAGCCGCgACA----------CGAcg -5'
14624 5' -60.4 NC_003521.1 + 121617 0.66 0.835539
Target:  5'- gGCGCucACCACCU-GGCGCagcgccacguccuugGUGUUGa -3'
miRNA:   3'- gCGCG--UGGUGGAgCCGCGa--------------CACGACg -5'
14624 5' -60.4 NC_003521.1 + 97486 0.66 0.802239
Target:  5'- cCGCGaGCCGCCaUCGGUGgCg--GCUGUc -3'
miRNA:   3'- -GCGCgUGGUGG-AGCCGC-GacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 153632 0.66 0.802239
Target:  5'- -cUGCGCCAgcgggugcgUCUCGGUGgaGcGCUGCa -3'
miRNA:   3'- gcGCGUGGU---------GGAGCCGCgaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 29190 0.66 0.805597
Target:  5'- gGCGUACUAUCgguacgaCGGCGgUGUcagcgaagacaucccGCUGCa -3'
miRNA:   3'- gCGCGUGGUGGa------GCCGCgACA---------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 207239 0.66 0.810592
Target:  5'- gGUGCGCgACCagaagaucuacCGGCGCUucucGUGcCUGCg -3'
miRNA:   3'- gCGCGUGgUGGa----------GCCGCGA----CAC-GACG- -5'
14624 5' -60.4 NC_003521.1 + 194896 0.66 0.842493
Target:  5'- cCGCGagAUCGCCUgGGCGaucuuUGUGC-GCa -3'
miRNA:   3'- -GCGCg-UGGUGGAgCCGCg----ACACGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.