miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 24204 0.66 0.842493
Target:  5'- gCGCGC-CCGCCUacCGuCGaCUGcUGCUGUc -3'
miRNA:   3'- -GCGCGuGGUGGA--GCcGC-GAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 26276 0.72 0.512071
Target:  5'- --aGCugCACCcCGGUGCUgGUGCUGg -3'
miRNA:   3'- gcgCGugGUGGaGCCGCGA-CACGACg -5'
14624 5' -60.4 NC_003521.1 + 26426 0.71 0.539965
Target:  5'- aGCGCcauucUCACCUgGGCGCUGUucgugGcCUGCa -3'
miRNA:   3'- gCGCGu----GGUGGAgCCGCGACA-----C-GACG- -5'
14624 5' -60.4 NC_003521.1 + 28763 0.66 0.826859
Target:  5'- cCGCGcCACCGCCcuaGCGCUGcacuuuCUGCg -3'
miRNA:   3'- -GCGC-GUGGUGGagcCGCGACac----GACG- -5'
14624 5' -60.4 NC_003521.1 + 29110 0.77 0.243156
Target:  5'- uCGcCGCACCAUC-CGcGCGCUGcGCUGCu -3'
miRNA:   3'- -GC-GCGUGGUGGaGC-CGCGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 29190 0.66 0.805597
Target:  5'- gGCGUACUAUCgguacgaCGGCGgUGUcagcgaagacaucccGCUGCa -3'
miRNA:   3'- gCGCGUGGUGGa------GCCGCgACA---------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 29248 0.68 0.740333
Target:  5'- gGgGaCACCGCCgcgagcgugCGGCGCUacugGCUGUa -3'
miRNA:   3'- gCgC-GUGGUGGa--------GCCGCGAca--CGACG- -5'
14624 5' -60.4 NC_003521.1 + 29701 0.75 0.338485
Target:  5'- -cCGCugCGuCCUCGGCGCcUG-GCUGCu -3'
miRNA:   3'- gcGCGugGU-GGAGCCGCG-ACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 33259 0.66 0.810592
Target:  5'- aCGCGCAgCAggcCGGCGCgaucGUGCaGCa -3'
miRNA:   3'- -GCGCGUgGUggaGCCGCGa---CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 36285 0.66 0.826859
Target:  5'- gGCGCuGCgCACCUCGGacCGCgacaacuacggGcGCUGCg -3'
miRNA:   3'- gCGCG-UG-GUGGAGCC--GCGa----------CaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 36367 0.69 0.67334
Target:  5'- gCGUgGCGCgGCUUCGcGUGCUgcuuuccGUGCUGCu -3'
miRNA:   3'- -GCG-CGUGgUGGAGC-CGCGA-------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 36826 0.67 0.785127
Target:  5'- -aCGCGCCACgggcCGGCGC--UGCUGUg -3'
miRNA:   3'- gcGCGUGGUGga--GCCGCGacACGACG- -5'
14624 5' -60.4 NC_003521.1 + 38711 0.7 0.587488
Target:  5'- uCGCGgGCguCCUggUGGCGCUacuuaagcgcGUGCUGCc -3'
miRNA:   3'- -GCGCgUGguGGA--GCCGCGA----------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 39148 0.68 0.740333
Target:  5'- uGUGCuGCCACCggCGGCGCa--GCUcGCg -3'
miRNA:   3'- gCGCG-UGGUGGa-GCCGCGacaCGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 40335 0.7 0.615425
Target:  5'- uGCGCGCCGCCagUuuggccaggaucaCGGCGCUGcGCaggGCc -3'
miRNA:   3'- gCGCGUGGUGG--A-------------GCCGCGACaCGa--CG- -5'
14624 5' -60.4 NC_003521.1 + 40401 0.7 0.627989
Target:  5'- gGCGCACCucgcugucgaaCUCGGUGCUGUccaccacggccagguGCUcGCg -3'
miRNA:   3'- gCGCGUGGug---------GAGCCGCGACA---------------CGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 43119 0.69 0.674301
Target:  5'- aGCGCugCggcgaGCgCUCGGCGCUGgGCgUGg -3'
miRNA:   3'- gCGCGugG-----UG-GAGCCGCGACaCG-ACg -5'
14624 5' -60.4 NC_003521.1 + 43153 0.72 0.493809
Target:  5'- gGUGCACgCGCUggUGGCGCUGcUGCcGCa -3'
miRNA:   3'- gCGCGUG-GUGGa-GCCGCGAC-ACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 43470 0.68 0.712384
Target:  5'- aGCGgGCCAgCgCGGCGgCcGUGCUGg -3'
miRNA:   3'- gCGCgUGGUgGaGCCGC-GaCACGACg -5'
14624 5' -60.4 NC_003521.1 + 44342 0.71 0.539965
Target:  5'- aGCuGCACCGCauccgCGacGCGCUGggGCUGCg -3'
miRNA:   3'- gCG-CGUGGUGga---GC--CGCGACa-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.