miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 163641 0.75 0.345725
Target:  5'- uCGUGCGg-GCCUCGGUGCgcgucucgGUGCUGCg -3'
miRNA:   3'- -GCGCGUggUGGAGCCGCGa-------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 46543 0.75 0.353075
Target:  5'- gGCGCACCaggGCCUC-GCGCcggGUGCUGa -3'
miRNA:   3'- gCGCGUGG---UGGAGcCGCGa--CACGACg -5'
14624 5' -60.4 NC_003521.1 + 153500 0.75 0.353075
Target:  5'- gCGCaGCugCGCCUCcaGGCGCUc-GCUGCg -3'
miRNA:   3'- -GCG-CGugGUGGAG--CCGCGAcaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 148933 0.75 0.360534
Target:  5'- -cCGCAgCGCCgugcUGGCGCgUGUGCUGCu -3'
miRNA:   3'- gcGCGUgGUGGa---GCCGCG-ACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 88451 0.75 0.360534
Target:  5'- aCGuCGU-CCGCCUCGGCGUcGgGCUGCa -3'
miRNA:   3'- -GC-GCGuGGUGGAGCCGCGaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 185075 0.74 0.37578
Target:  5'- cCGCGCcugucgcuGCCGCC-CGcGCGCUGggaggcGCUGCg -3'
miRNA:   3'- -GCGCG--------UGGUGGaGC-CGCGACa-----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 156604 0.74 0.37578
Target:  5'- uGCaGCGCgGCCUCucGCGCcugGUGCUGCg -3'
miRNA:   3'- gCG-CGUGgUGGAGc-CGCGa--CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 223752 0.74 0.383564
Target:  5'- aCGUGgguCGCCGCCagcgguaucgUCGGCGCUgcugGUGCUGCc -3'
miRNA:   3'- -GCGC---GUGGUGG----------AGCCGCGA----CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 136554 0.74 0.383564
Target:  5'- gCGCGCuucGCCGCCgacUGGCaGCUGccGCUGCa -3'
miRNA:   3'- -GCGCG---UGGUGGa--GCCG-CGACa-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 113348 0.74 0.399451
Target:  5'- gGUGaCGCgCAUCUCGGCGCUG-GCggGCg -3'
miRNA:   3'- gCGC-GUG-GUGGAGCCGCGACaCGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 221913 0.74 0.407551
Target:  5'- gCGCgGCGCCACCcuUCGGgGCUGccGCgGCg -3'
miRNA:   3'- -GCG-CGUGGUGG--AGCCgCGACa-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 210487 0.74 0.407551
Target:  5'- uGCGCGCCGCCgacucgcUGGCGCaGUuGCUGg -3'
miRNA:   3'- gCGCGUGGUGGa------GCCGCGaCA-CGACg -5'
14624 5' -60.4 NC_003521.1 + 187455 0.74 0.407551
Target:  5'- gGUGCGCCGCgUCaGCGggacgGUGCUGCa -3'
miRNA:   3'- gCGCGUGGUGgAGcCGCga---CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 107444 0.73 0.424055
Target:  5'- gCGCGgACCGCC---GCGCUGUGCcgGCg -3'
miRNA:   3'- -GCGCgUGGUGGagcCGCGACACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 168541 0.73 0.432455
Target:  5'- gGCcaGCGCgGCggCGGCGCUGgcggGCUGCg -3'
miRNA:   3'- gCG--CGUGgUGgaGCCGCGACa---CGACG- -5'
14624 5' -60.4 NC_003521.1 + 90845 0.73 0.440951
Target:  5'- uGCGCGCCGCC-C-GUGCUGcUGCUGa -3'
miRNA:   3'- gCGCGUGGUGGaGcCGCGAC-ACGACg -5'
14624 5' -60.4 NC_003521.1 + 2727 0.73 0.440951
Target:  5'- aGCGCcgucACCGCCUCGcugGCUG-GCUGCu -3'
miRNA:   3'- gCGCG----UGGUGGAGCcg-CGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 15056 0.73 0.458224
Target:  5'- gGCGCGagCGCgagCGGCGC-GUGCUGCa -3'
miRNA:   3'- gCGCGUg-GUGga-GCCGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 98801 0.72 0.466995
Target:  5'- cCGCGCGCCGuCCacgucgaGGCGUUGcaGCUGCu -3'
miRNA:   3'- -GCGCGUGGU-GGag-----CCGCGACa-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 144175 0.72 0.466995
Target:  5'- aCGCcgGCGCCGCCUgcCGcGCGCUGgagaacggcaaGCUGCa -3'
miRNA:   3'- -GCG--CGUGGUGGA--GC-CGCGACa----------CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.