Results 1 - 20 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14624 | 5' | -60.4 | NC_003521.1 | + | 225162 | 1.1 | 0.001656 |
Target: 5'- uCGCGCACCACCUCGGCGCUGUGCUGCc -3' miRNA: 3'- -GCGCGUGGUGGAGCCGCGACACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 119543 | 0.86 | 0.073981 |
Target: 5'- cCGCaGCACCACCUCGGCGCcGUGCg-- -3' miRNA: 3'- -GCG-CGUGGUGGAGCCGCGaCACGacg -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 151862 | 0.81 | 0.155566 |
Target: 5'- gGCGCugCagaucagucGCCg-GGCGCUGUGCUGCa -3' miRNA: 3'- gCGCGugG---------UGGagCCGCGACACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 19868 | 0.8 | 0.15936 |
Target: 5'- aGCGCucccugcugacgGCCGCgUCGGCGCUGauccUGCUGCu -3' miRNA: 3'- gCGCG------------UGGUGgAGCCGCGAC----ACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 69636 | 0.79 | 0.192821 |
Target: 5'- aGUGCACCAgCUCGGCGUUgGUGUUGa -3' miRNA: 3'- gCGCGUGGUgGAGCCGCGA-CACGACg -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 223664 | 0.78 | 0.216741 |
Target: 5'- aGCGCugCGCCUCGGCcucGCgccGCUGCu -3' miRNA: 3'- gCGCGugGUGGAGCCG---CGacaCGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 113534 | 0.78 | 0.227 |
Target: 5'- gGCGCGCCACCaCGGCGUgucggacGUGCcGCg -3' miRNA: 3'- gCGCGUGGUGGaGCCGCGa------CACGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 208809 | 0.78 | 0.237667 |
Target: 5'- aCGCGCACCaauuACCUgCGGCaGCUGUGCa-- -3' miRNA: 3'- -GCGCGUGG----UGGA-GCCG-CGACACGacg -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 29110 | 0.77 | 0.243156 |
Target: 5'- uCGcCGCACCAUC-CGcGCGCUGcGCUGCu -3' miRNA: 3'- -GC-GCGUGGUGGaGC-CGCGACaCGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 111033 | 0.77 | 0.243156 |
Target: 5'- aCGCGguCgGCCUCGGCGCgcacGUGC-GCg -3' miRNA: 3'- -GCGCguGgUGGAGCCGCGa---CACGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 18716 | 0.77 | 0.266172 |
Target: 5'- gGCGCAgCGCCUCGaGaCGCUGccggcGCUGCa -3' miRNA: 3'- gCGCGUgGUGGAGC-C-GCGACa----CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 87226 | 0.77 | 0.272195 |
Target: 5'- --aGCGCCaACCU-GGCGCUGcUGCUGCa -3' miRNA: 3'- gcgCGUGG-UGGAgCCGCGAC-ACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 166198 | 0.76 | 0.284568 |
Target: 5'- cCGCGCACCACCccgcugUUGGCGCg--GCgGCg -3' miRNA: 3'- -GCGCGUGGUGG------AGCCGCGacaCGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 79632 | 0.76 | 0.290919 |
Target: 5'- -cCGCGgCGCCUCGGCGUcgucUGcUGCUGCa -3' miRNA: 3'- gcGCGUgGUGGAGCCGCG----AC-ACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 184724 | 0.76 | 0.297381 |
Target: 5'- aCGCGaCGCUACUUCGaucuGCGC-GUGCUGCg -3' miRNA: 3'- -GCGC-GUGGUGGAGC----CGCGaCACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 69428 | 0.76 | 0.310638 |
Target: 5'- gCGCGCACCACCaCGGUGgaGUcGCaggUGCg -3' miRNA: 3'- -GCGCGUGGUGGaGCCGCgaCA-CG---ACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 14769 | 0.75 | 0.317433 |
Target: 5'- gGCGCGCCuucgugGCCgaGGUGCUgGUGCUGCu -3' miRNA: 3'- gCGCGUGG------UGGagCCGCGA-CACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 84237 | 0.75 | 0.331357 |
Target: 5'- gCGCuGCACCACCUCGGgGUggaUGCgaugGCg -3' miRNA: 3'- -GCG-CGUGGUGGAGCCgCGac-ACGa---CG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 110829 | 0.75 | 0.331357 |
Target: 5'- uGCGCGCCGCCgcCGGCGCaGcgGCaGCg -3' miRNA: 3'- gCGCGUGGUGGa-GCCGCGaCa-CGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 29701 | 0.75 | 0.338485 |
Target: 5'- -cCGCugCGuCCUCGGCGCcUG-GCUGCu -3' miRNA: 3'- gcGCGugGU-GGAGCCGCG-ACaCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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