miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 152794 0.72 0.493809
Target:  5'- uGCGCACCGCCUCGGUcaccgGCagGUGgUacaGCu -3'
miRNA:   3'- gCGCGUGGUGGAGCCG-----CGa-CACgA---CG- -5'
14624 5' -60.4 NC_003521.1 + 156604 0.74 0.37578
Target:  5'- uGCaGCGCgGCCUCucGCGCcugGUGCUGCg -3'
miRNA:   3'- gCG-CGUGgUGGAGc-CGCGa--CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 136554 0.74 0.383564
Target:  5'- gCGCGCuucGCCGCCgacUGGCaGCUGccGCUGCa -3'
miRNA:   3'- -GCGCG---UGGUGGa--GCCG-CGACa-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 221913 0.74 0.407551
Target:  5'- gCGCgGCGCCACCcuUCGGgGCUGccGCgGCg -3'
miRNA:   3'- -GCG-CGUGGUGG--AGCCgCGACa-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 168541 0.73 0.432455
Target:  5'- gGCcaGCGCgGCggCGGCGCUGgcggGCUGCg -3'
miRNA:   3'- gCG--CGUGgUGgaGCCGCGACa---CGACG- -5'
14624 5' -60.4 NC_003521.1 + 2727 0.73 0.440951
Target:  5'- aGCGCcgucACCGCCUCGcugGCUG-GCUGCu -3'
miRNA:   3'- gCGCG----UGGUGGAGCcg-CGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 144175 0.72 0.466995
Target:  5'- aCGCcgGCGCCGCCUgcCGcGCGCUGgagaacggcaaGCUGCa -3'
miRNA:   3'- -GCG--CGUGGUGGA--GC-CGCGACa----------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 201829 0.72 0.484791
Target:  5'- aGCGCcacauCCACCa--GCGcCUGUGCUGCg -3'
miRNA:   3'- gCGCGu----GGUGGagcCGC-GACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 64031 0.72 0.493809
Target:  5'- aGCGCACCAUCgaccaGGUGCUGgaGgUGCu -3'
miRNA:   3'- gCGCGUGGUGGag---CCGCGACa-CgACG- -5'
14624 5' -60.4 NC_003521.1 + 148933 0.75 0.360534
Target:  5'- -cCGCAgCGCCgugcUGGCGCgUGUGCUGCu -3'
miRNA:   3'- gcGCGUgGUGGa---GCCGCG-ACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 88451 0.75 0.360534
Target:  5'- aCGuCGU-CCGCCUCGGCGUcGgGCUGCa -3'
miRNA:   3'- -GC-GCGuGGUGGAGCCGCGaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 153500 0.75 0.353075
Target:  5'- gCGCaGCugCGCCUCcaGGCGCUc-GCUGCg -3'
miRNA:   3'- -GCG-CGugGUGGAG--CCGCGAcaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 119543 0.86 0.073981
Target:  5'- cCGCaGCACCACCUCGGCGCcGUGCg-- -3'
miRNA:   3'- -GCG-CGUGGUGGAGCCGCGaCACGacg -5'
14624 5' -60.4 NC_003521.1 + 151862 0.81 0.155566
Target:  5'- gGCGCugCagaucagucGCCg-GGCGCUGUGCUGCa -3'
miRNA:   3'- gCGCGugG---------UGGagCCGCGACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 69636 0.79 0.192821
Target:  5'- aGUGCACCAgCUCGGCGUUgGUGUUGa -3'
miRNA:   3'- gCGCGUGGUgGAGCCGCGA-CACGACg -5'
14624 5' -60.4 NC_003521.1 + 223664 0.78 0.216741
Target:  5'- aGCGCugCGCCUCGGCcucGCgccGCUGCu -3'
miRNA:   3'- gCGCGugGUGGAGCCG---CGacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 29110 0.77 0.243156
Target:  5'- uCGcCGCACCAUC-CGcGCGCUGcGCUGCu -3'
miRNA:   3'- -GC-GCGUGGUGGaGC-CGCGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 79632 0.76 0.290919
Target:  5'- -cCGCGgCGCCUCGGCGUcgucUGcUGCUGCa -3'
miRNA:   3'- gcGCGUgGUGGAGCCGCG----AC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 69428 0.76 0.310638
Target:  5'- gCGCGCACCACCaCGGUGgaGUcGCaggUGCg -3'
miRNA:   3'- -GCGCGUGGUGGaGCCGCgaCA-CG---ACG- -5'
14624 5' -60.4 NC_003521.1 + 46543 0.75 0.353075
Target:  5'- gGCGCACCaggGCCUC-GCGCcggGUGCUGa -3'
miRNA:   3'- gCGCGUGG---UGGAGcCGCGa--CACGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.