miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 160774 0.66 0.826859
Target:  5'- gCGCGUGCCGCCggCGGCacGCgg-GC-GCg -3'
miRNA:   3'- -GCGCGUGGUGGa-GCCG--CGacaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 121617 0.66 0.835539
Target:  5'- gGCGCucACCACCU-GGCGCagcgccacguccuugGUGUUGa -3'
miRNA:   3'- gCGCG--UGGUGGAgCCGCGa--------------CACGACg -5'
14624 5' -60.4 NC_003521.1 + 213964 0.66 0.802239
Target:  5'- uGgGCGCCGgCUCGG-GCcGUGCUa- -3'
miRNA:   3'- gCgCGUGGUgGAGCCgCGaCACGAcg -5'
14624 5' -60.4 NC_003521.1 + 36285 0.66 0.826859
Target:  5'- gGCGCuGCgCACCUCGGacCGCgacaacuacggGcGCUGCg -3'
miRNA:   3'- gCGCG-UG-GUGGAGCC--GCGa----------CaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 187876 0.66 0.826859
Target:  5'- gGCGguCACCACCUCGG-GCggcacggGCgGCg -3'
miRNA:   3'- gCGC--GUGGUGGAGCCgCGaca----CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 162431 0.66 0.805597
Target:  5'- aCGCGCuuucgguuuccaguCCGCCUCGGCGgUGUuccuccuccgGCUu- -3'
miRNA:   3'- -GCGCGu-------------GGUGGAGCCGCgACA----------CGAcg -5'
14624 5' -60.4 NC_003521.1 + 117392 0.66 0.82526
Target:  5'- gGCGCcuccguccuaucCCGCCgUCGGUGCcGUGCccGCg -3'
miRNA:   3'- gCGCGu-----------GGUGG-AGCCGCGaCACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 97486 0.66 0.802239
Target:  5'- cCGCGaGCCGCCaUCGGUGgCg--GCUGUc -3'
miRNA:   3'- -GCGCgUGGUGG-AGCCGC-GacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 123900 0.66 0.810592
Target:  5'- uCGCGUGCUGUCggcgcgCGGCGCUGUucuccaccaGUUGCa -3'
miRNA:   3'- -GCGCGUGGUGGa-----GCCGCGACA---------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 153632 0.66 0.802239
Target:  5'- -cUGCGCCAgcgggugcgUCUCGGUGgaGcGCUGCa -3'
miRNA:   3'- gcGCGUGGU---------GGAGCCGCgaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 24204 0.66 0.842493
Target:  5'- gCGCGC-CCGCCUacCGuCGaCUGcUGCUGUc -3'
miRNA:   3'- -GCGCGuGGUGGA--GCcGC-GAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 150958 0.66 0.818801
Target:  5'- uCGUGCAgUCGCgCgacgCGGCGCUG-GCgGCc -3'
miRNA:   3'- -GCGCGU-GGUG-Ga---GCCGCGACaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 60312 0.66 0.826859
Target:  5'- aGCGC-CUACgCgcagaCGGCGCUGaUGCaGCc -3'
miRNA:   3'- gCGCGuGGUG-Ga----GCCGCGAC-ACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 142224 0.66 0.834758
Target:  5'- uCGC-CAUgGCCUCGuCGCUGcGCUcGCg -3'
miRNA:   3'- -GCGcGUGgUGGAGCcGCGACaCGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 164440 0.66 0.810592
Target:  5'- aGCaGCGCCACCgCGGCcGCggccGUcacggucgccGCUGCc -3'
miRNA:   3'- gCG-CGUGGUGGaGCCG-CGa---CA----------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 33259 0.66 0.810592
Target:  5'- aCGCGCAgCAggcCGGCGCgaucGUGCaGCa -3'
miRNA:   3'- -GCGCGUgGUggaGCCGCGa---CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 137673 0.66 0.821235
Target:  5'- uGCGCGacgagauCCGCCU-GGUGCUGcagcaccgccgcgcGCUGCg -3'
miRNA:   3'- gCGCGU-------GGUGGAgCCGCGACa-------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 117267 0.66 0.834758
Target:  5'- cCGC-CACCGCCgucgUCGGCcGUgGUGCcgGCu -3'
miRNA:   3'- -GCGcGUGGUGG----AGCCG-CGaCACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 107266 0.66 0.834758
Target:  5'- uGUGCGCCACCU-GGUGUgUGUGUc-- -3'
miRNA:   3'- gCGCGUGGUGGAgCCGCG-ACACGacg -5'
14624 5' -60.4 NC_003521.1 + 28763 0.66 0.826859
Target:  5'- cCGCGcCACCGCCcuaGCGCUGcacuuuCUGCg -3'
miRNA:   3'- -GCGC-GUGGUGGagcCGCGACac----GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.