miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 349 0.66 0.802239
Target:  5'- aGCGUgaGCUGCCggaggCGGCGCcUGcgaccGCUGCc -3'
miRNA:   3'- gCGCG--UGGUGGa----GCCGCG-ACa----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 1602 0.72 0.484791
Target:  5'- aGCGCcacauCCACCa--GCGcCUGUGCUGCg -3'
miRNA:   3'- gCGCGu----GGUGGagcCGC-GACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 2324 0.67 0.793747
Target:  5'- uGCGCGCCgGCCUCcuggGGCuGCUGacccuggGCcGCg -3'
miRNA:   3'- gCGCGUGG-UGGAG----CCG-CGACa------CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 2727 0.73 0.440951
Target:  5'- aGCGCcgucACCGCCUCGcugGCUG-GCUGCu -3'
miRNA:   3'- gCGCG----UGGUGGAGCcg-CGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 8014 0.68 0.721772
Target:  5'- aGCGCcguagcuccagACCGCCggaGGCGUUGagaaccaGCUGCu -3'
miRNA:   3'- gCGCG-----------UGGUGGag-CCGCGACa------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 13930 0.68 0.740333
Target:  5'- cCGCGCugGCCGCCgUGGUGCccccgcaGCUGCc -3'
miRNA:   3'- -GCGCG--UGGUGGaGCCGCGaca----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 14460 0.66 0.802239
Target:  5'- gGCGUcaGCCGCCgcucccgCGGCGCUacccGCgggGCg -3'
miRNA:   3'- gCGCG--UGGUGGa------GCCGCGAca--CGa--CG- -5'
14624 5' -60.4 NC_003521.1 + 14769 0.75 0.317433
Target:  5'- gGCGCGCCuucgugGCCgaGGUGCUgGUGCUGCu -3'
miRNA:   3'- gCGCGUGG------UGGagCCGCGA-CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 15056 0.73 0.458224
Target:  5'- gGCGCGagCGCgagCGGCGC-GUGCUGCa -3'
miRNA:   3'- gCGCGUg-GUGga-GCCGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 16032 0.66 0.842493
Target:  5'- aCGCGCGucCCGCaCgacgUGGUGCgggcgcUGCUGCa -3'
miRNA:   3'- -GCGCGU--GGUG-Ga---GCCGCGac----ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 18319 0.66 0.818801
Target:  5'- uCGUGC-CCAg--CGGCGUgGUGCUGUu -3'
miRNA:   3'- -GCGCGuGGUggaGCCGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 18444 0.68 0.739413
Target:  5'- aCGCGCggccuguGCCGCUUCGacCGCgg-GCUGCg -3'
miRNA:   3'- -GCGCG-------UGGUGGAGCc-GCGacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 18716 0.77 0.266172
Target:  5'- gGCGCAgCGCCUCGaGaCGCUGccggcGCUGCa -3'
miRNA:   3'- gCGCGUgGUGGAGC-C-GCGACa----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 19562 0.66 0.840191
Target:  5'- cCGCGUgcucgguggucuucACCACCaCGGUccaccuGCUGUGCUa- -3'
miRNA:   3'- -GCGCG--------------UGGUGGaGCCG------CGACACGAcg -5'
14624 5' -60.4 NC_003521.1 + 19868 0.8 0.15936
Target:  5'- aGCGCucccugcugacgGCCGCgUCGGCGCUGauccUGCUGCu -3'
miRNA:   3'- gCGCG------------UGGUGgAGCCGCGAC----ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 20727 0.66 0.826859
Target:  5'- -cCGUACCGCUggCGGUGCaucaGCUGCg -3'
miRNA:   3'- gcGCGUGGUGGa-GCCGCGaca-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 21354 0.7 0.587488
Target:  5'- aGCGCGCUGCUaUGGuCGCUcGUGCcGCa -3'
miRNA:   3'- gCGCGUGGUGGaGCC-GCGA-CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 21934 0.66 0.842493
Target:  5'- gGCGgGCgGCCUCGG-GCUGgaGCaguggGCg -3'
miRNA:   3'- gCGCgUGgUGGAGCCgCGACa-CGa----CG- -5'
14624 5' -60.4 NC_003521.1 + 22747 0.67 0.767524
Target:  5'- gGCGcCGCCGCCU---CGCUGUGCUuCg -3'
miRNA:   3'- gCGC-GUGGUGGAgccGCGACACGAcG- -5'
14624 5' -60.4 NC_003521.1 + 24011 0.68 0.740333
Target:  5'- uGCGCGCCAUC-CGGCGUaaccUGacGCgGCu -3'
miRNA:   3'- gCGCGUGGUGGaGCCGCG----ACa-CGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.