miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 239376 0.68 0.740333
Target:  5'- uGUGCuGCCACCggCGGCGCa--GCUcGCg -3'
miRNA:   3'- gCGCG-UGGUGGa-GCCGCGacaCGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 236479 0.67 0.793747
Target:  5'- aGCGaACCGCCggCGGCGgUG-GCgccagGCa -3'
miRNA:   3'- gCGCgUGGUGGa-GCCGCgACaCGa----CG- -5'
14624 5' -60.4 NC_003521.1 + 234269 0.69 0.655045
Target:  5'- aGUGCGCCACCUCGuCGCccUGCccugggGCg -3'
miRNA:   3'- gCGCGUGGUGGAGCcGCGacACGa-----CG- -5'
14624 5' -60.4 NC_003521.1 + 233372 0.67 0.793747
Target:  5'- -uCGCACguCCcgcgUGGUGCUGUGCgccGCg -3'
miRNA:   3'- gcGCGUGguGGa---GCCGCGACACGa--CG- -5'
14624 5' -60.4 NC_003521.1 + 232373 0.68 0.712384
Target:  5'- cCGCGaagcggaggucCACCGUCUC-GCGCUG-GCUGCg -3'
miRNA:   3'- -GCGC-----------GUGGUGGAGcCGCGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 228160 0.68 0.731091
Target:  5'- gGCGCACCAaccaCUUGuaGCGCUGUucguggugacGCUGg -3'
miRNA:   3'- gCGCGUGGUg---GAGC--CGCGACA----------CGACg -5'
14624 5' -60.4 NC_003521.1 + 225505 0.67 0.758558
Target:  5'- gCGCGCugAUCACCcgcUCGGCGCcGUcGC-GCg -3'
miRNA:   3'- -GCGCG--UGGUGG---AGCCGCGaCA-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 225162 1.1 0.001656
Target:  5'- uCGCGCACCACCUCGGCGCUGUGCUGCc -3'
miRNA:   3'- -GCGCGUGGUGGAGCCGCGACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 223819 0.69 0.68293
Target:  5'- uGCGCcgccGCCACCgcgGGCGCcUGcugucccugcggcUGCUGCu -3'
miRNA:   3'- gCGCG----UGGUGGag-CCGCG-AC-------------ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 223752 0.74 0.383564
Target:  5'- aCGUGgguCGCCGCCagcgguaucgUCGGCGCUgcugGUGCUGCc -3'
miRNA:   3'- -GCGC---GUGGUGG----------AGCCGCGA----CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 223664 0.78 0.216741
Target:  5'- aGCGCugCGCCUCGGCcucGCgccGCUGCu -3'
miRNA:   3'- gCGCGugGUGGAGCCG---CGacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 223160 0.69 0.655045
Target:  5'- aCGCaGgGCCACCgUGGUGCcccgGUGCUGg -3'
miRNA:   3'- -GCG-CgUGGUGGaGCCGCGa---CACGACg -5'
14624 5' -60.4 NC_003521.1 + 221913 0.74 0.407551
Target:  5'- gCGCgGCGCCACCcuUCGGgGCUGccGCgGCg -3'
miRNA:   3'- -GCG-CGUGGUGG--AGCCgCGACa-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 213964 0.66 0.802239
Target:  5'- uGgGCGCCGgCUCGG-GCcGUGCUa- -3'
miRNA:   3'- gCgCGUGGUgGAGCCgCGaCACGAcg -5'
14624 5' -60.4 NC_003521.1 + 213377 0.66 0.826859
Target:  5'- gGCGCucACgGCCgaauUCGGC-CUGgGCUGCc -3'
miRNA:   3'- gCGCG--UGgUGG----AGCCGcGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 212107 0.7 0.616391
Target:  5'- gCGUGCGCCACCaUCuGGCGCacgGUcggacuCUGCa -3'
miRNA:   3'- -GCGCGUGGUGG-AG-CCGCGa--CAc-----GACG- -5'
14624 5' -60.4 NC_003521.1 + 210487 0.74 0.407551
Target:  5'- uGCGCGCCGCCgacucgcUGGCGCaGUuGCUGg -3'
miRNA:   3'- gCGCGUGGUGGa------GCCGCGaCA-CGACg -5'
14624 5' -60.4 NC_003521.1 + 208915 0.66 0.810592
Target:  5'- uCGCGCGCUGCCUgCcGCaguucCUGUGCcGCg -3'
miRNA:   3'- -GCGCGUGGUGGA-GcCGc----GACACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 208809 0.78 0.237667
Target:  5'- aCGCGCACCaauuACCUgCGGCaGCUGUGCa-- -3'
miRNA:   3'- -GCGCGUGG----UGGA-GCCG-CGACACGacg -5'
14624 5' -60.4 NC_003521.1 + 208725 0.67 0.767524
Target:  5'- aGcCGCGCCGCCaaacgcaUGGCGCUG-GCcGUg -3'
miRNA:   3'- gC-GCGUGGUGGa------GCCGCGACaCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.