miRNA display CGI


Results 21 - 40 of 255 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 208415 0.71 0.568354
Target:  5'- cCGUGCGCCACg--GGCuGCUGUGUcGCa -3'
miRNA:   3'- -GCGCGUGGUGgagCCG-CGACACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 207239 0.66 0.810592
Target:  5'- gGUGCGCgACCagaagaucuacCGGCGCUucucGUGcCUGCg -3'
miRNA:   3'- gCGCGUGgUGGa----------GCCGCGA----CAC-GACG- -5'
14624 5' -60.4 NC_003521.1 + 206240 0.67 0.785127
Target:  5'- gCGCGCGCCugcaGCC-CGGCGUcagccugGUGCa-- -3'
miRNA:   3'- -GCGCGUGG----UGGaGCCGCGa------CACGacg -5'
14624 5' -60.4 NC_003521.1 + 205336 0.7 0.577904
Target:  5'- aCG-GCGCCuCCUCGGCGgCggcaGCUGCg -3'
miRNA:   3'- -GCgCGUGGuGGAGCCGC-Gaca-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 202552 0.67 0.793747
Target:  5'- uGCGCGCCgGCCUCcuggGGCuGCUGacccuggGCcGCg -3'
miRNA:   3'- gCGCGUGG-UGGAG----CCG-CGACa------CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 201829 0.72 0.484791
Target:  5'- aGCGCcacauCCACCa--GCGcCUGUGCUGCg -3'
miRNA:   3'- gCGCGu----GGUGGagcCGC-GACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 197595 0.67 0.749491
Target:  5'- aGCGCGCC-CaaugugCGGCGUcugGUGCaGCa -3'
miRNA:   3'- gCGCGUGGuGga----GCCGCGa--CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 196995 0.67 0.792891
Target:  5'- gGCcCGCgGCCggCGGCgGCUGacccggcUGCUGCg -3'
miRNA:   3'- gCGcGUGgUGGa-GCCG-CGAC-------ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 196653 0.67 0.793747
Target:  5'- uCGCGgAgUACCgaCGGCGCcagcUGCUGCu -3'
miRNA:   3'- -GCGCgUgGUGGa-GCCGCGac--ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 196201 0.66 0.842493
Target:  5'- gGCGCAUCAUcugcagCUCGaGCGUgUGUcgcaGCUGCa -3'
miRNA:   3'- gCGCGUGGUG------GAGC-CGCG-ACA----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 194896 0.66 0.842493
Target:  5'- cCGCGagAUCGCCUgGGCGaucuuUGUGC-GCa -3'
miRNA:   3'- -GCGCg-UGGUGGAgCCGCg----ACACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 193598 0.68 0.731091
Target:  5'- uCGCGguuuuCGCC-CCUUGGuCGgUGUGUUGCc -3'
miRNA:   3'- -GCGC-----GUGGuGGAGCC-GCgACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 193383 0.66 0.826859
Target:  5'- aGUGCGgCGCC-CGGCuGCaUGUGCccugGCc -3'
miRNA:   3'- gCGCGUgGUGGaGCCG-CG-ACACGa---CG- -5'
14624 5' -60.4 NC_003521.1 + 188139 0.69 0.645389
Target:  5'- gGCugGCACCGCCgacgcugcCGGUGCcGcUGCUGCc -3'
miRNA:   3'- gCG--CGUGGUGGa-------GCCGCGaC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 187876 0.66 0.826859
Target:  5'- gGCGguCACCACCUCGG-GCggcacggGCgGCg -3'
miRNA:   3'- gCGC--GUGGUGGAGCCgCGaca----CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 187637 0.69 0.683887
Target:  5'- cCGCGCGCCGCUggccaucuucaUCGGCGaggGcgGCcGCg -3'
miRNA:   3'- -GCGCGUGGUGG-----------AGCCGCga-Ca-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 187455 0.74 0.407551
Target:  5'- gGUGCGCCGCgUCaGCGggacgGUGCUGCa -3'
miRNA:   3'- gCGCGUGGUGgAGcCGCga---CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 186279 0.67 0.785127
Target:  5'- aGCGCaacgucaaaaaGCCGCCgggccccagCGGCGCcGUGCa-- -3'
miRNA:   3'- gCGCG-----------UGGUGGa--------GCCGCGaCACGacg -5'
14624 5' -60.4 NC_003521.1 + 185182 0.67 0.777263
Target:  5'- gGCGCACCuguggagcgugacgcCCUCGGUGUgg-GCcGCg -3'
miRNA:   3'- gCGCGUGGu--------------GGAGCCGCGacaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 185075 0.74 0.37578
Target:  5'- cCGCGCcugucgcuGCCGCC-CGcGCGCUGggaggcGCUGCg -3'
miRNA:   3'- -GCGCG--------UGGUGGaGC-CGCGACa-----CGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.