miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 19868 0.8 0.15936
Target:  5'- aGCGCucccugcugacgGCCGCgUCGGCGCUGauccUGCUGCu -3'
miRNA:   3'- gCGCG------------UGGUGgAGCCGCGAC----ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 210487 0.74 0.407551
Target:  5'- uGCGCGCCGCCgacucgcUGGCGCaGUuGCUGg -3'
miRNA:   3'- gCGCGUGGUGGa------GCCGCGaCA-CGACg -5'
14624 5' -60.4 NC_003521.1 + 90845 0.73 0.440951
Target:  5'- uGCGCGCCGCC-C-GUGCUGcUGCUGa -3'
miRNA:   3'- gCGCGUGGUGGaGcCGCGAC-ACGACg -5'
14624 5' -60.4 NC_003521.1 + 24204 0.66 0.842493
Target:  5'- gCGCGC-CCGCCUacCGuCGaCUGcUGCUGUc -3'
miRNA:   3'- -GCGCGuGGUGGA--GCcGC-GAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 18716 0.77 0.266172
Target:  5'- gGCGCAgCGCCUCGaGaCGCUGccggcGCUGCa -3'
miRNA:   3'- gCGCGUgGUGGAGC-C-GCGACa----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 87226 0.77 0.272195
Target:  5'- --aGCGCCaACCU-GGCGCUGcUGCUGCa -3'
miRNA:   3'- gcgCGUGG-UGGAgCCGCGAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 184724 0.76 0.297381
Target:  5'- aCGCGaCGCUACUUCGaucuGCGC-GUGCUGCg -3'
miRNA:   3'- -GCGC-GUGGUGGAGC----CGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 14769 0.75 0.317433
Target:  5'- gGCGCGCCuucgugGCCgaGGUGCUgGUGCUGCu -3'
miRNA:   3'- gCGCGUGG------UGGagCCGCGA-CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 29701 0.75 0.338485
Target:  5'- -cCGCugCGuCCUCGGCGCcUG-GCUGCu -3'
miRNA:   3'- gcGCGugGU-GGAGCCGCG-ACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 187455 0.74 0.407551
Target:  5'- gGUGCGCCGCgUCaGCGggacgGUGCUGCa -3'
miRNA:   3'- gCGCGUGGUGgAGcCGCga---CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 185075 0.74 0.37578
Target:  5'- cCGCGCcugucgcuGCCGCC-CGcGCGCUGggaggcGCUGCg -3'
miRNA:   3'- -GCGCG--------UGGUGGaGC-CGCGACa-----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 110829 0.75 0.331357
Target:  5'- uGCGCGCCGCCgcCGGCGCaGcgGCaGCg -3'
miRNA:   3'- gCGCGUGGUGGa-GCCGCGaCa-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 113534 0.78 0.227
Target:  5'- gGCGCGCCACCaCGGCGUgucggacGUGCcGCg -3'
miRNA:   3'- gCGCGUGGUGGaGCCGCGa------CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 223752 0.74 0.383564
Target:  5'- aCGUGgguCGCCGCCagcgguaucgUCGGCGCUgcugGUGCUGCc -3'
miRNA:   3'- -GCGC---GUGGUGG----------AGCCGCGA----CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 208809 0.78 0.237667
Target:  5'- aCGCGCACCaauuACCUgCGGCaGCUGUGCa-- -3'
miRNA:   3'- -GCGCGUGG----UGGA-GCCG-CGACACGacg -5'
14624 5' -60.4 NC_003521.1 + 84237 0.75 0.331357
Target:  5'- gCGCuGCACCACCUCGGgGUggaUGCgaugGCg -3'
miRNA:   3'- -GCG-CGUGGUGGAGCCgCGac-ACGa---CG- -5'
14624 5' -60.4 NC_003521.1 + 113348 0.74 0.399451
Target:  5'- gGUGaCGCgCAUCUCGGCGCUG-GCggGCg -3'
miRNA:   3'- gCGC-GUG-GUGGAGCCGCGACaCGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 107444 0.73 0.424055
Target:  5'- gCGCGgACCGCC---GCGCUGUGCcgGCg -3'
miRNA:   3'- -GCGCgUGGUGGagcCGCGACACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 111033 0.77 0.243156
Target:  5'- aCGCGguCgGCCUCGGCGCgcacGUGC-GCg -3'
miRNA:   3'- -GCGCguGgUGGAGCCGCGa---CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 166198 0.76 0.284568
Target:  5'- cCGCGCACCACCccgcugUUGGCGCg--GCgGCg -3'
miRNA:   3'- -GCGCGUGGUGG------AGCCGCGacaCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.