Results 21 - 40 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14624 | 5' | -60.4 | NC_003521.1 | + | 193383 | 0.66 | 0.826859 |
Target: 5'- aGUGCGgCGCC-CGGCuGCaUGUGCccugGCc -3' miRNA: 3'- gCGCGUgGUGGaGCCG-CG-ACACGa---CG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 117197 | 0.66 | 0.826859 |
Target: 5'- uGCGCAUCAUCaCGcCGCUGcuacggcgGCUGCc -3' miRNA: 3'- gCGCGUGGUGGaGCcGCGACa-------CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 187876 | 0.66 | 0.826859 |
Target: 5'- gGCGguCACCACCUCGG-GCggcacggGCgGCg -3' miRNA: 3'- gCGC--GUGGUGGAGCCgCGaca----CGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 60312 | 0.66 | 0.826859 |
Target: 5'- aGCGC-CUACgCgcagaCGGCGCUGaUGCaGCc -3' miRNA: 3'- gCGCGuGGUG-Ga----GCCGCGAC-ACGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 28763 | 0.66 | 0.826859 |
Target: 5'- cCGCGcCACCGCCcuaGCGCUGcacuuuCUGCg -3' miRNA: 3'- -GCGC-GUGGUGGagcCGCGACac----GACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 117392 | 0.66 | 0.82526 |
Target: 5'- gGCGCcuccguccuaucCCGCCgUCGGUGCcGUGCccGCg -3' miRNA: 3'- gCGCGu-----------GGUGG-AGCCGCGaCACGa-CG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 74856 | 0.66 | 0.824458 |
Target: 5'- gGUGCGCUuccucaGCCUgcccgagcacgacaCGGCGC--UGCUGCg -3' miRNA: 3'- gCGCGUGG------UGGA--------------GCCGCGacACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 137673 | 0.66 | 0.821235 |
Target: 5'- uGCGCGacgagauCCGCCU-GGUGCUGcagcaccgccgcgcGCUGCg -3' miRNA: 3'- gCGCGU-------GGUGGAgCCGCGACa-------------CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 150958 | 0.66 | 0.818801 |
Target: 5'- uCGUGCAgUCGCgCgacgCGGCGCUG-GCgGCc -3' miRNA: 3'- -GCGCGU-GGUG-Ga---GCCGCGACaCGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 122521 | 0.66 | 0.818801 |
Target: 5'- gGCGgGCagGCCggCGGCGgUgguaGUGCUGCu -3' miRNA: 3'- gCGCgUGg-UGGa-GCCGCgA----CACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 18319 | 0.66 | 0.818801 |
Target: 5'- uCGUGC-CCAg--CGGCGUgGUGCUGUu -3' miRNA: 3'- -GCGCGuGGUggaGCCGCGaCACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 123942 | 0.66 | 0.818801 |
Target: 5'- gGCGCGCCGCCgcagCcGCGCca--CUGCg -3' miRNA: 3'- gCGCGUGGUGGa---GcCGCGacacGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 116285 | 0.66 | 0.817987 |
Target: 5'- aCGUGCGCaAgCU-GGCGCUGgaggacagcuccaUGCUGCu -3' miRNA: 3'- -GCGCGUGgUgGAgCCGCGAC-------------ACGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 114048 | 0.66 | 0.813893 |
Target: 5'- aCGCGCAgCGCCagGGC-CUGccggacuucacgucGCUGCa -3' miRNA: 3'- -GCGCGUgGUGGagCCGcGACa-------------CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 123900 | 0.66 | 0.810592 |
Target: 5'- uCGCGUGCUGUCggcgcgCGGCGCUGUucuccaccaGUUGCa -3' miRNA: 3'- -GCGCGUGGUGGa-----GCCGCGACA---------CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 33259 | 0.66 | 0.810592 |
Target: 5'- aCGCGCAgCAggcCGGCGCgaucGUGCaGCa -3' miRNA: 3'- -GCGCGUgGUggaGCCGCGa---CACGaCG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 141440 | 0.66 | 0.810592 |
Target: 5'- uCGCuGgACCGCCUCagagaGGUGCUgcagGUGgUGCg -3' miRNA: 3'- -GCG-CgUGGUGGAG-----CCGCGA----CACgACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 164440 | 0.66 | 0.810592 |
Target: 5'- aGCaGCGCCACCgCGGCcGCggccGUcacggucgccGCUGCc -3' miRNA: 3'- gCG-CGUGGUGGaGCCG-CGa---CA----------CGACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 207239 | 0.66 | 0.810592 |
Target: 5'- gGUGCGCgACCagaagaucuacCGGCGCUucucGUGcCUGCg -3' miRNA: 3'- gCGCGUGgUGGa----------GCCGCGA----CAC-GACG- -5' |
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14624 | 5' | -60.4 | NC_003521.1 | + | 208915 | 0.66 | 0.810592 |
Target: 5'- uCGCGCGCUGCCUgCcGCaguucCUGUGCcGCg -3' miRNA: 3'- -GCGCGUGGUGGA-GcCGc----GACACGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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