miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 213377 0.66 0.826859
Target:  5'- gGCGCucACgGCCgaauUCGGC-CUGgGCUGCc -3'
miRNA:   3'- gCGCG--UGgUGG----AGCCGcGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 193383 0.66 0.826859
Target:  5'- aGUGCGgCGCC-CGGCuGCaUGUGCccugGCc -3'
miRNA:   3'- gCGCGUgGUGGaGCCG-CG-ACACGa---CG- -5'
14624 5' -60.4 NC_003521.1 + 75167 0.66 0.826859
Target:  5'- aCGCaugGUGCCAgCgCGGCGUgcUGCUGCu -3'
miRNA:   3'- -GCG---CGUGGUgGaGCCGCGacACGACG- -5'
14624 5' -60.4 NC_003521.1 + 20727 0.66 0.826859
Target:  5'- -cCGUACCGCUggCGGUGCaucaGCUGCg -3'
miRNA:   3'- gcGCGUGGUGGa-GCCGCGaca-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 117197 0.66 0.826859
Target:  5'- uGCGCAUCAUCaCGcCGCUGcuacggcgGCUGCc -3'
miRNA:   3'- gCGCGUGGUGGaGCcGCGACa-------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 117392 0.66 0.82526
Target:  5'- gGCGCcuccguccuaucCCGCCgUCGGUGCcGUGCccGCg -3'
miRNA:   3'- gCGCGu-----------GGUGG-AGCCGCGaCACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 74856 0.66 0.824458
Target:  5'- gGUGCGCUuccucaGCCUgcccgagcacgacaCGGCGC--UGCUGCg -3'
miRNA:   3'- gCGCGUGG------UGGA--------------GCCGCGacACGACG- -5'
14624 5' -60.4 NC_003521.1 + 137673 0.66 0.821235
Target:  5'- uGCGCGacgagauCCGCCU-GGUGCUGcagcaccgccgcgcGCUGCg -3'
miRNA:   3'- gCGCGU-------GGUGGAgCCGCGACa-------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 18319 0.66 0.818801
Target:  5'- uCGUGC-CCAg--CGGCGUgGUGCUGUu -3'
miRNA:   3'- -GCGCGuGGUggaGCCGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 123942 0.66 0.818801
Target:  5'- gGCGCGCCGCCgcagCcGCGCca--CUGCg -3'
miRNA:   3'- gCGCGUGGUGGa---GcCGCGacacGACG- -5'
14624 5' -60.4 NC_003521.1 + 150958 0.66 0.818801
Target:  5'- uCGUGCAgUCGCgCgacgCGGCGCUG-GCgGCc -3'
miRNA:   3'- -GCGCGU-GGUG-Ga---GCCGCGACaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 122521 0.66 0.818801
Target:  5'- gGCGgGCagGCCggCGGCGgUgguaGUGCUGCu -3'
miRNA:   3'- gCGCgUGg-UGGa-GCCGCgA----CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 116285 0.66 0.817987
Target:  5'- aCGUGCGCaAgCU-GGCGCUGgaggacagcuccaUGCUGCu -3'
miRNA:   3'- -GCGCGUGgUgGAgCCGCGAC-------------ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 114048 0.66 0.813893
Target:  5'- aCGCGCAgCGCCagGGC-CUGccggacuucacgucGCUGCa -3'
miRNA:   3'- -GCGCGUgGUGGagCCGcGACa-------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 208915 0.66 0.810592
Target:  5'- uCGCGCGCUGCCUgCcGCaguucCUGUGCcGCg -3'
miRNA:   3'- -GCGCGUGGUGGA-GcCGc----GACACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 164440 0.66 0.810592
Target:  5'- aGCaGCGCCACCgCGGCcGCggccGUcacggucgccGCUGCc -3'
miRNA:   3'- gCG-CGUGGUGGaGCCG-CGa---CA----------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 87448 0.66 0.810592
Target:  5'- -cUGCGCUACgaCGG-GCUGUGCcgGCa -3'
miRNA:   3'- gcGCGUGGUGgaGCCgCGACACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 141440 0.66 0.810592
Target:  5'- uCGCuGgACCGCCUCagagaGGUGCUgcagGUGgUGCg -3'
miRNA:   3'- -GCG-CgUGGUGGAG-----CCGCGA----CACgACG- -5'
14624 5' -60.4 NC_003521.1 + 123900 0.66 0.810592
Target:  5'- uCGCGUGCUGUCggcgcgCGGCGCUGUucuccaccaGUUGCa -3'
miRNA:   3'- -GCGCGUGGUGGa-----GCCGCGACA---------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 33259 0.66 0.810592
Target:  5'- aCGCGCAgCAggcCGGCGCgaucGUGCaGCa -3'
miRNA:   3'- -GCGCGUgGUggaGCCGCGa---CACGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.