miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 208915 0.66 0.810592
Target:  5'- uCGCGCGCUGCCUgCcGCaguucCUGUGCcGCg -3'
miRNA:   3'- -GCGCGUGGUGGA-GcCGc----GACACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 76405 0.66 0.810592
Target:  5'- uGCuaGCACCAgCggCGGUGUggugGUGCUGg -3'
miRNA:   3'- gCG--CGUGGUgGa-GCCGCGa---CACGACg -5'
14624 5' -60.4 NC_003521.1 + 162431 0.66 0.805597
Target:  5'- aCGCGCuuucgguuuccaguCCGCCUCGGCGgUGUuccuccuccgGCUu- -3'
miRNA:   3'- -GCGCGu-------------GGUGGAGCCGCgACA----------CGAcg -5'
14624 5' -60.4 NC_003521.1 + 29190 0.66 0.805597
Target:  5'- gGCGUACUAUCgguacgaCGGCGgUGUcagcgaagacaucccGCUGCa -3'
miRNA:   3'- gCGCGUGGUGGa------GCCGCgACA---------------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 114968 0.66 0.802239
Target:  5'- aCGCG-GCCACCaaGGCGCUGUacgaccaccGCgaGCc -3'
miRNA:   3'- -GCGCgUGGUGGagCCGCGACA---------CGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 349 0.66 0.802239
Target:  5'- aGCGUgaGCUGCCggaggCGGCGCcUGcgaccGCUGCc -3'
miRNA:   3'- gCGCG--UGGUGGa----GCCGCG-ACa----CGACG- -5'
14624 5' -60.4 NC_003521.1 + 14460 0.66 0.802239
Target:  5'- gGCGUcaGCCGCCgcucccgCGGCGCUacccGCgggGCg -3'
miRNA:   3'- gCGCG--UGGUGGa------GCCGCGAca--CGa--CG- -5'
14624 5' -60.4 NC_003521.1 + 155946 0.66 0.802239
Target:  5'- uCGCGcCACCcggACCgggCGGC-CUucuaccguacgGUGCUGCg -3'
miRNA:   3'- -GCGC-GUGG---UGGa--GCCGcGA-----------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 153632 0.66 0.802239
Target:  5'- -cUGCGCCAgcgggugcgUCUCGGUGgaGcGCUGCa -3'
miRNA:   3'- gcGCGUGGU---------GGAGCCGCgaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 115538 0.66 0.802239
Target:  5'- aCGaCGCGgcUCGCCUgaCGgaGCGCcGUGCUGCg -3'
miRNA:   3'- -GC-GCGU--GGUGGA--GC--CGCGaCACGACG- -5'
14624 5' -60.4 NC_003521.1 + 122845 0.66 0.802239
Target:  5'- uCGCGCAgCuCgUCGuaGCGCUgGUGCUGg -3'
miRNA:   3'- -GCGCGUgGuGgAGC--CGCGA-CACGACg -5'
14624 5' -60.4 NC_003521.1 + 97486 0.66 0.802239
Target:  5'- cCGCGaGCCGCCaUCGGUGgCg--GCUGUc -3'
miRNA:   3'- -GCGCgUGGUGG-AGCCGC-GacaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 213964 0.66 0.802239
Target:  5'- uGgGCGCCGgCUCGG-GCcGUGCUa- -3'
miRNA:   3'- gCgCGUGGUgGAGCCgCGaCACGAcg -5'
14624 5' -60.4 NC_003521.1 + 72282 0.66 0.802239
Target:  5'- cCGCcaGCGCCGCCgccGCGCUG-GCcGCc -3'
miRNA:   3'- -GCG--CGUGGUGGagcCGCGACaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 202552 0.67 0.793747
Target:  5'- uGCGCGCCgGCCUCcuggGGCuGCUGacccuggGCcGCg -3'
miRNA:   3'- gCGCGUGG-UGGAG----CCG-CGACa------CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 154019 0.67 0.793747
Target:  5'- uCGCGCAgCACCU-GGUGCaUGcucuUGCcGCg -3'
miRNA:   3'- -GCGCGUgGUGGAgCCGCG-AC----ACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 236479 0.67 0.793747
Target:  5'- aGCGaACCGCCggCGGCGgUG-GCgccagGCa -3'
miRNA:   3'- gCGCgUGGUGGa-GCCGCgACaCGa----CG- -5'
14624 5' -60.4 NC_003521.1 + 2324 0.67 0.793747
Target:  5'- uGCGCGCCgGCCUCcuggGGCuGCUGacccuggGCcGCg -3'
miRNA:   3'- gCGCGUGG-UGGAG----CCG-CGACa------CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 167986 0.67 0.793747
Target:  5'- uCGcCGCGCCcagGCCgucgCGGUGagcCUGcUGCUGCu -3'
miRNA:   3'- -GC-GCGUGG---UGGa---GCCGC---GAC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 102858 0.67 0.793747
Target:  5'- aGCGCACCACgUCGGCauaccacacgcGCUcggGCUccucggGCa -3'
miRNA:   3'- gCGCGUGGUGgAGCCG-----------CGAca-CGA------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.