miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 88451 0.75 0.360534
Target:  5'- aCGuCGU-CCGCCUCGGCGUcGgGCUGCa -3'
miRNA:   3'- -GC-GCGuGGUGGAGCCGCGaCaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 148933 0.75 0.360534
Target:  5'- -cCGCAgCGCCgugcUGGCGCgUGUGCUGCu -3'
miRNA:   3'- gcGCGUgGUGGa---GCCGCG-ACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 156604 0.74 0.37578
Target:  5'- uGCaGCGCgGCCUCucGCGCcugGUGCUGCg -3'
miRNA:   3'- gCG-CGUGgUGGAGc-CGCGa--CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 136554 0.74 0.383564
Target:  5'- gCGCGCuucGCCGCCgacUGGCaGCUGccGCUGCa -3'
miRNA:   3'- -GCGCG---UGGUGGa--GCCG-CGACa-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 221913 0.74 0.407551
Target:  5'- gCGCgGCGCCACCcuUCGGgGCUGccGCgGCg -3'
miRNA:   3'- -GCG-CGUGGUGG--AGCCgCGACa-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 168541 0.73 0.432455
Target:  5'- gGCcaGCGCgGCggCGGCGCUGgcggGCUGCg -3'
miRNA:   3'- gCG--CGUGgUGgaGCCGCGACa---CGACG- -5'
14624 5' -60.4 NC_003521.1 + 2727 0.73 0.440951
Target:  5'- aGCGCcgucACCGCCUCGcugGCUG-GCUGCu -3'
miRNA:   3'- gCGCG----UGGUGGAGCcg-CGACaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 144175 0.72 0.466995
Target:  5'- aCGCcgGCGCCGCCUgcCGcGCGCUGgagaacggcaaGCUGCa -3'
miRNA:   3'- -GCG--CGUGGUGGA--GC-CGCGACa----------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 201829 0.72 0.484791
Target:  5'- aGCGCcacauCCACCa--GCGcCUGUGCUGCg -3'
miRNA:   3'- gCGCGu----GGUGGagcCGC-GACACGACG- -5'
14624 5' -60.4 NC_003521.1 + 64031 0.72 0.493809
Target:  5'- aGCGCACCAUCgaccaGGUGCUGgaGgUGCu -3'
miRNA:   3'- gCGCGUGGUGGag---CCGCGACa-CgACG- -5'
14624 5' -60.4 NC_003521.1 + 152794 0.72 0.493809
Target:  5'- uGCGCACCGCCUCGGUcaccgGCagGUGgUacaGCu -3'
miRNA:   3'- gCGCGUGGUGGAGCCG-----CGa-CACgA---CG- -5'
14624 5' -60.4 NC_003521.1 + 43153 0.72 0.493809
Target:  5'- gGUGCACgCGCUggUGGCGCUGcUGCcGCa -3'
miRNA:   3'- gCGCGUG-GUGGa-GCCGCGAC-ACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 127307 0.72 0.502904
Target:  5'- gGCGCGCCucgAUgUUGGCGUUGgucagcgGCUGCc -3'
miRNA:   3'- gCGCGUGG---UGgAGCCGCGACa------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 168318 0.71 0.530606
Target:  5'- gGCGCGCCACCUCcuCGaagaUGUGCUuGUa -3'
miRNA:   3'- gCGCGUGGUGGAGccGCg---ACACGA-CG- -5'
14624 5' -60.4 NC_003521.1 + 137994 0.71 0.530606
Target:  5'- cCGCGCGCaggucgAUCUCGGCGUcgagGUGCgcgUGCg -3'
miRNA:   3'- -GCGCGUGg-----UGGAGCCGCGa---CACG---ACG- -5'
14624 5' -60.4 NC_003521.1 + 44342 0.71 0.539965
Target:  5'- aGCuGCACCGCauccgCGacGCGCUGggGCUGCg -3'
miRNA:   3'- gCG-CGUGGUGga---GC--CGCGACa-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 129793 0.7 0.576947
Target:  5'- uGCGCGCCgagGCCgaccgcgucaagUUGGUGCUGggccgccUGCUGCu -3'
miRNA:   3'- gCGCGUGG---UGG------------AGCCGCGAC-------ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 150682 0.7 0.577904
Target:  5'- gCGcCGCugCugCUgGGUGCUGcUGCgccgGCg -3'
miRNA:   3'- -GC-GCGugGugGAgCCGCGAC-ACGa---CG- -5'
14624 5' -60.4 NC_003521.1 + 155414 0.7 0.587488
Target:  5'- aGCGCGCCuACCa-GGaGCUGUGCgaGCu -3'
miRNA:   3'- gCGCGUGG-UGGagCCgCGACACGa-CG- -5'
14624 5' -60.4 NC_003521.1 + 133815 0.7 0.587488
Target:  5'- gGUG-GCCGCCUgucUGGCGCUGaUGCUGa -3'
miRNA:   3'- gCGCgUGGUGGA---GCCGCGAC-ACGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.