miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14624 5' -60.4 NC_003521.1 + 44475 0.68 0.740333
Target:  5'- -aCGCACUACCUgcacGCGCUGgaaaucgaGCUGCa -3'
miRNA:   3'- gcGCGUGGUGGAgc--CGCGACa-------CGACG- -5'
14624 5' -60.4 NC_003521.1 + 44758 0.68 0.716147
Target:  5'- uCGCGCcaguCCACCUcgccggccuuccgccCGGUGCUcuacaaccUGCUGCa -3'
miRNA:   3'- -GCGCGu---GGUGGA---------------GCCGCGAc-------ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 46543 0.75 0.353075
Target:  5'- gGCGCACCaggGCCUC-GCGCcggGUGCUGa -3'
miRNA:   3'- gCGCGUGG---UGGAGcCGCGa--CACGACg -5'
14624 5' -60.4 NC_003521.1 + 47998 0.67 0.749491
Target:  5'- gGaCGCGCCGCCg-GGCuuCUGcgGCUGCu -3'
miRNA:   3'- gC-GCGUGGUGGagCCGc-GACa-CGACG- -5'
14624 5' -60.4 NC_003521.1 + 49113 0.7 0.616391
Target:  5'- uGCGCGuggUgACCgCGGCGCcGcUGCUGCg -3'
miRNA:   3'- gCGCGU---GgUGGaGCCGCGaC-ACGACG- -5'
14624 5' -60.4 NC_003521.1 + 55730 0.69 0.674301
Target:  5'- gCGCGCAgCGCCUCccaGCGCgcggGCgGCa -3'
miRNA:   3'- -GCGCGUgGUGGAGc--CGCGaca-CGaCG- -5'
14624 5' -60.4 NC_003521.1 + 56131 0.69 0.683887
Target:  5'- --aGCACCACgUCGGgcgagugcgGCUcGUGCUGCu -3'
miRNA:   3'- gcgCGUGGUGgAGCCg--------CGA-CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 56921 0.7 0.616391
Target:  5'- cCGCaGCACCgccuccagcACCUCGGC-CUcGUGCcGCa -3'
miRNA:   3'- -GCG-CGUGG---------UGGAGCCGcGA-CACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 59049 0.68 0.721772
Target:  5'- uCGCG-ACUACCg-GGCGCUGUGg-GCc -3'
miRNA:   3'- -GCGCgUGGUGGagCCGCGACACgaCG- -5'
14624 5' -60.4 NC_003521.1 + 59796 0.7 0.625089
Target:  5'- -cCGCAaggaCACCgacaCGGCGCUggaccgcGUGCUGCu -3'
miRNA:   3'- gcGCGUg---GUGGa---GCCGCGA-------CACGACG- -5'
14624 5' -60.4 NC_003521.1 + 60312 0.66 0.826859
Target:  5'- aGCGC-CUACgCgcagaCGGCGCUGaUGCaGCc -3'
miRNA:   3'- gCGCGuGGUG-Ga----GCCGCGAC-ACGaCG- -5'
14624 5' -60.4 NC_003521.1 + 61265 0.69 0.655045
Target:  5'- aCGCGCcucuguuaCugCUUGGCGCUGaGCcGCg -3'
miRNA:   3'- -GCGCGug------GugGAGCCGCGACaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 64031 0.72 0.493809
Target:  5'- aGCGCACCAUCgaccaGGUGCUGgaGgUGCu -3'
miRNA:   3'- gCGCGUGGUGGag---CCGCGACa-CgACG- -5'
14624 5' -60.4 NC_003521.1 + 69428 0.76 0.310638
Target:  5'- gCGCGCACCACCaCGGUGgaGUcGCaggUGCg -3'
miRNA:   3'- -GCGCGUGGUGGaGCCGCgaCA-CG---ACG- -5'
14624 5' -60.4 NC_003521.1 + 69636 0.79 0.192821
Target:  5'- aGUGCACCAgCUCGGCGUUgGUGUUGa -3'
miRNA:   3'- gCGCGUGGUgGAGCCGCGA-CACGACg -5'
14624 5' -60.4 NC_003521.1 + 72282 0.66 0.802239
Target:  5'- cCGCcaGCGCCGCCgccGCGCUG-GCcGCc -3'
miRNA:   3'- -GCG--CGUGGUGGagcCGCGACaCGaCG- -5'
14624 5' -60.4 NC_003521.1 + 73155 0.69 0.664684
Target:  5'- gGCgGCGCCGCCUCGGC-CUGcgacCUGg -3'
miRNA:   3'- gCG-CGUGGUGGAGCCGcGACac--GACg -5'
14624 5' -60.4 NC_003521.1 + 73236 0.67 0.793747
Target:  5'- uGCGCGCCGCUcuccaUCGacacGCGCUGcaaccuCUGCg -3'
miRNA:   3'- gCGCGUGGUGG-----AGC----CGCGACac----GACG- -5'
14624 5' -60.4 NC_003521.1 + 73657 0.67 0.767524
Target:  5'- cCGCG-GCCGCCUCcaagacgcccgaGGCGCccaagGcGCUGCu -3'
miRNA:   3'- -GCGCgUGGUGGAG------------CCGCGa----CaCGACG- -5'
14624 5' -60.4 NC_003521.1 + 74337 0.72 0.493809
Target:  5'- gGCGCcCCGCUggaUGGCGCUGcUGCgcgGCu -3'
miRNA:   3'- gCGCGuGGUGGa--GCCGCGAC-ACGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.