miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 110454 0.67 0.803665
Target:  5'- gCCGGUgGCGCUGA--GCgCGCaCGGCGc -3'
miRNA:   3'- -GGUCG-CGCGACUagUGgGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 26438 0.67 0.803665
Target:  5'- aCCuGgGCGCUGuucGUgGCCUGCaaCGGCGu -3'
miRNA:   3'- -GGuCgCGCGAC---UAgUGGGCGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 79083 0.67 0.803665
Target:  5'- aCCAGCucccccaCGCUGGcgaugaccUCGCgcaaCCGCUCGGUGu -3'
miRNA:   3'- -GGUCGc------GCGACU--------AGUG----GGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 165986 0.67 0.803665
Target:  5'- gCAGCgugagGCGCgGGaCGCCgucgCGCUCGGCGc -3'
miRNA:   3'- gGUCG-----CGCGaCUaGUGG----GCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 240136 0.67 0.803665
Target:  5'- cCCGGCGgGCgcgGAaagCGCUgGCUCauGGCGu -3'
miRNA:   3'- -GGUCGCgCGa--CUa--GUGGgCGAG--CCGC- -5'
14625 3' -60.2 NC_003521.1 + 156158 0.67 0.803665
Target:  5'- gCUGGCGCuGCUGcgaCGCCUGUgCGGCa -3'
miRNA:   3'- -GGUCGCG-CGACua-GUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 109575 0.67 0.803665
Target:  5'- gCUAGCauGCGCgUGAagugCGCCaGCUCGGCc -3'
miRNA:   3'- -GGUCG--CGCG-ACUa---GUGGgCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 152610 0.67 0.803665
Target:  5'- cUCGGCGCccugGUUGGUCACCaggcgGCgcaGGCGg -3'
miRNA:   3'- -GGUCGCG----CGACUAGUGGg----CGag-CCGC- -5'
14625 3' -60.2 NC_003521.1 + 150679 0.67 0.802831
Target:  5'- gCGGCGCcgcugcuGCUGGgugCugCUGCgccggCGGCGa -3'
miRNA:   3'- gGUCGCG-------CGACUa--GugGGCGa----GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 95165 0.67 0.795267
Target:  5'- aCUcGCGgGCcGAgggCACCucgCGCUCGGCGc -3'
miRNA:   3'- -GGuCGCgCGaCUa--GUGG---GCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 163009 0.67 0.795267
Target:  5'- -gAGCGCGCUGcUCACCaugaucuGCgagaaCGGCa -3'
miRNA:   3'- ggUCGCGCGACuAGUGGg------CGa----GCCGc -5'
14625 3' -60.2 NC_003521.1 + 44593 0.67 0.795267
Target:  5'- gUCAGCGCGC-GA-CACCUGCagCuGCGa -3'
miRNA:   3'- -GGUCGCGCGaCUaGUGGGCGa-GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 216828 0.67 0.795267
Target:  5'- -uGGCGCGCaggaGGUCgcaGCCCGCggCGGaCGa -3'
miRNA:   3'- ggUCGCGCGa---CUAG---UGGGCGa-GCC-GC- -5'
14625 3' -60.2 NC_003521.1 + 42962 0.67 0.78674
Target:  5'- cCCAGCgaGCGCg----ACCCGC-CGGCGc -3'
miRNA:   3'- -GGUCG--CGCGacuagUGGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 69187 0.67 0.78674
Target:  5'- gCGGcCGCGCUaGAcaUACCCGacgUCGGCGg -3'
miRNA:   3'- gGUC-GCGCGA-CUa-GUGGGCg--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 53506 0.67 0.78674
Target:  5'- gCCGGUGCGCUGuuguccgacgCGgCCGCUCccaccgGGCu -3'
miRNA:   3'- -GGUCGCGCGACua--------GUgGGCGAG------CCGc -5'
14625 3' -60.2 NC_003521.1 + 182050 0.67 0.78674
Target:  5'- gCCGGCGCGCgc--CGCCCuGCagUGGCu -3'
miRNA:   3'- -GGUCGCGCGacuaGUGGG-CGa-GCCGc -5'
14625 3' -60.2 NC_003521.1 + 31664 0.67 0.77809
Target:  5'- cCCGGCGCGa-GGUgAgCCGCgauUCGGCu -3'
miRNA:   3'- -GGUCGCGCgaCUAgUgGGCG---AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 113792 0.67 0.77809
Target:  5'- gCCAGCGCGacgGG-CA-CCGCggCGGCGu -3'
miRNA:   3'- -GGUCGCGCga-CUaGUgGGCGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 137043 0.67 0.77809
Target:  5'- aCCGGCG-GCUGAccUCAggcaCCGCcCGGCc -3'
miRNA:   3'- -GGUCGCgCGACU--AGUg---GGCGaGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.