miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 127227 0.66 0.833499
Target:  5'- gCUGGCGCGgUGGUCcuccacgaagagcgGCUCG-UCGGCGu -3'
miRNA:   3'- -GGUCGCGCgACUAG--------------UGGGCgAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 169027 0.66 0.828013
Target:  5'- uUguGCGCGCgccGGUCaaGCUgGuCUCGGCGc -3'
miRNA:   3'- -GguCGCGCGa--CUAG--UGGgC-GAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 122602 0.66 0.828013
Target:  5'- gCCGGCGUuuGCUGuuguuCCUGCgUCGGCu -3'
miRNA:   3'- -GGUCGCG--CGACuagu-GGGCG-AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 145984 0.66 0.828013
Target:  5'- gCUGGCGCGCUu----CCCGCUgcCGGCu -3'
miRNA:   3'- -GGUCGCGCGAcuaguGGGCGA--GCCGc -5'
14625 3' -60.2 NC_003521.1 + 123442 0.66 0.828013
Target:  5'- aCAGCGCGUgccgCACCUgcaccgucagGCUgGGCGu -3'
miRNA:   3'- gGUCGCGCGacuaGUGGG----------CGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 133354 0.66 0.828013
Target:  5'- gCCGGaCGUGgaGAUCAgcacggUCCGC-CGGCa -3'
miRNA:   3'- -GGUC-GCGCgaCUAGU------GGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 145724 0.66 0.828013
Target:  5'- -aAGCGCGCg---CGgCCGCUCaaGGCGc -3'
miRNA:   3'- ggUCGCGCGacuaGUgGGCGAG--CCGC- -5'
14625 3' -60.2 NC_003521.1 + 87178 0.66 0.828013
Target:  5'- gCCGuGCaGCGCUccaccGAgacgCACCCGCU-GGCGc -3'
miRNA:   3'- -GGU-CG-CGCGA-----CUa---GUGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 16262 0.67 0.820045
Target:  5'- gCGGCuGCGCUGccgCugguuCCUGCUgGGCGc -3'
miRNA:   3'- gGUCG-CGCGACua-Gu----GGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 63092 0.67 0.820045
Target:  5'- gCCGGCGCGCUGccCGCCCuC-CaGCa -3'
miRNA:   3'- -GGUCGCGCGACuaGUGGGcGaGcCGc -5'
14625 3' -60.2 NC_003521.1 + 102779 0.67 0.820045
Target:  5'- gCGGCuGCGC-GAUgACgCGC-CGGCGg -3'
miRNA:   3'- gGUCG-CGCGaCUAgUGgGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 162591 0.67 0.820045
Target:  5'- gCCGGCuGCGgUGG-CACUCGCUCGaCa -3'
miRNA:   3'- -GGUCG-CGCgACUaGUGGGCGAGCcGc -5'
14625 3' -60.2 NC_003521.1 + 138398 0.67 0.820045
Target:  5'- gCGGCGCGUcugGAUCGCCgUGUggaccagccucuUCGGCu -3'
miRNA:   3'- gGUCGCGCGa--CUAGUGG-GCG------------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 155058 0.67 0.811926
Target:  5'- aCGGCugcgagGCGCUGGcCACCuCGCUCauGGCc -3'
miRNA:   3'- gGUCG------CGCGACUaGUGG-GCGAG--CCGc -5'
14625 3' -60.2 NC_003521.1 + 4602 0.67 0.811926
Target:  5'- aCgGGcCGCGCggggGAacaugaccUCACCCGCuccgUCGGCu -3'
miRNA:   3'- -GgUC-GCGCGa---CU--------AGUGGGCG----AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 119928 0.67 0.811926
Target:  5'- --uGC-CGCUGAcgggCACCCGCUCcaggGGCa -3'
miRNA:   3'- gguCGcGCGACUa---GUGGGCGAG----CCGc -5'
14625 3' -60.2 NC_003521.1 + 43566 0.67 0.811926
Target:  5'- gCCGGCGcCGC--GUCAagcaCCGCUCcucgGGCGg -3'
miRNA:   3'- -GGUCGC-GCGacUAGUg---GGCGAG----CCGC- -5'
14625 3' -60.2 NC_003521.1 + 117363 0.67 0.811926
Target:  5'- gCCAGuCGCcaacccGC-GGUC-CCCGCUaCGGCGc -3'
miRNA:   3'- -GGUC-GCG------CGaCUAGuGGGCGA-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 117185 0.67 0.811926
Target:  5'- aCCuGUuuGCGCUGcgcaucAUCACgCCGCUgcuaCGGCGg -3'
miRNA:   3'- -GGuCG--CGCGAC------UAGUG-GGCGA----GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 203927 0.67 0.806986
Target:  5'- gUAGCGCgugauGCgcuugugcccguacgUGGUCACCCGCUugcCGGCc -3'
miRNA:   3'- gGUCGCG-----CG---------------ACUAGUGGGCGA---GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.