miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 151748 0.7 0.613868
Target:  5'- cCCAGgaaucCGCGCUGucauugucgcccguUCACCCGCaccaugagCGGCGa -3'
miRNA:   3'- -GGUC-----GCGCGACu-------------AGUGGGCGa-------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 196977 0.7 0.619617
Target:  5'- gCCGGgGCGCcugUGAcggGCCCGCggcCGGCGg -3'
miRNA:   3'- -GGUCgCGCG---ACUag-UGGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 207698 0.7 0.619617
Target:  5'- aUCGGCGUGCUGGagaagGCCCGCuacgccgucaUCGGCu -3'
miRNA:   3'- -GGUCGCGCGACUag---UGGGCG----------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 106853 0.7 0.629203
Target:  5'- gCCAGCguccGCGCaUGGaCGCCCGUaCGGUGa -3'
miRNA:   3'- -GGUCG----CGCG-ACUaGUGGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 17142 0.7 0.629203
Target:  5'- gCCGGCGCGCU--UCGCCCGaccCUCccuGGCc -3'
miRNA:   3'- -GGUCGCGCGAcuAGUGGGC---GAG---CCGc -5'
14625 3' -60.2 NC_003521.1 + 167463 0.7 0.629203
Target:  5'- -gAGCGUGCUGAggGCCgUGCgCGGCGc -3'
miRNA:   3'- ggUCGCGCGACUagUGG-GCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 132460 0.7 0.642626
Target:  5'- uUCGGCGCGUccGGUCAgCCGUcuucggagaccgccgUCGGCGc -3'
miRNA:   3'- -GGUCGCGCGa-CUAGUgGGCG---------------AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 116645 0.7 0.645501
Target:  5'- cCCAGCcggcaggcgcacagGCGCU-AUCGCCUGCaCGGCa -3'
miRNA:   3'- -GGUCG--------------CGCGAcUAGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 144248 0.7 0.647418
Target:  5'- -gGGCGCGCaGAUCAgcuaccacgccugUCUGCUgGGCGa -3'
miRNA:   3'- ggUCGCGCGaCUAGU-------------GGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 154148 0.7 0.648376
Target:  5'- gCCAGauacgacgaCGCGCUGAUCcucaACCUGUcgUCGGCc -3'
miRNA:   3'- -GGUC---------GCGCGACUAG----UGGGCG--AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 138038 0.7 0.648376
Target:  5'- gCCGGCGCacgggGCUGuggGUCGCCCGCgaccgCcGCGg -3'
miRNA:   3'- -GGUCGCG-----CGAC---UAGUGGGCGa----GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 201578 0.7 0.657948
Target:  5'- aCCGGCugGgGCUGAaCGCCCGCg-GGCc -3'
miRNA:   3'- -GGUCG--CgCGACUaGUGGGCGagCCGc -5'
14625 3' -60.2 NC_003521.1 + 112414 0.7 0.657948
Target:  5'- aCCGGC-CGCcuuucgGAccgaCGCCCGCUCaGGCGg -3'
miRNA:   3'- -GGUCGcGCGa-----CUa---GUGGGCGAG-CCGC- -5'
14625 3' -60.2 NC_003521.1 + 49839 0.7 0.657948
Target:  5'- aCCuGCGC-CUG--CugCCGCUCGGCc -3'
miRNA:   3'- -GGuCGCGcGACuaGugGGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 89862 0.69 0.664639
Target:  5'- gCCAGCGCcgcgucgcgcgacuGCacgaUGAUCugACCgCGCUCGGCc -3'
miRNA:   3'- -GGUCGCG--------------CG----ACUAG--UGG-GCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 28593 0.69 0.667502
Target:  5'- cCCGGCgaGCGC-GAccUCACCCGCUacgUGGUGc -3'
miRNA:   3'- -GGUCG--CGCGaCU--AGUGGGCGA---GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 183802 0.69 0.667502
Target:  5'- gCGGCGUGU---UCAUCCGCguggCGGCGu -3'
miRNA:   3'- gGUCGCGCGacuAGUGGGCGa---GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 114853 0.69 0.667502
Target:  5'- gCGGUgugcgaacugGUGCUGA-CGCCCGCgUCGGCc -3'
miRNA:   3'- gGUCG----------CGCGACUaGUGGGCG-AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 15334 0.69 0.667502
Target:  5'- aUCAGCGCGCUGGUgcagCAgUCGCgacUGGUGa -3'
miRNA:   3'- -GGUCGCGCGACUA----GUgGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 72607 0.69 0.671318
Target:  5'- -gAGCGCGCUGcucaagcugcacaacAUCACCgUGCU-GGCGg -3'
miRNA:   3'- ggUCGCGCGAC---------------UAGUGG-GCGAgCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.