miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 149179 0.66 0.850956
Target:  5'- cUCGGCGCGC--GUCGCCa-C-CGGCGg -3'
miRNA:   3'- -GGUCGCGCGacUAGUGGgcGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 116869 0.66 0.850956
Target:  5'- aCCuGCGCGCgcagugGcgCGgCUGCggCGGCGc -3'
miRNA:   3'- -GGuCGCGCGa-----CuaGUgGGCGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 196416 0.66 0.850956
Target:  5'- gCAGCGgcacagacaguCGCUG-UCGCCCgGgUCGGCc -3'
miRNA:   3'- gGUCGC-----------GCGACuAGUGGG-CgAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 181467 0.66 0.850956
Target:  5'- cCCAGUcgGCGCaGAcgGCCCaucccaGCUCGGUGa -3'
miRNA:   3'- -GGUCG--CGCGaCUagUGGG------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 110678 0.66 0.835825
Target:  5'- gCCAGCGCGUcGGUgGCCUcgaGCUUgaggucgaaGGCGc -3'
miRNA:   3'- -GGUCGCGCGaCUAgUGGG---CGAG---------CCGC- -5'
14625 3' -60.2 NC_003521.1 + 92444 0.66 0.834276
Target:  5'- cCCAGCcuccccgcacccCGCUcGGcUUGCCCGCUCGGgGg -3'
miRNA:   3'- -GGUCGc-----------GCGA-CU-AGUGGGCGAGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 127227 0.66 0.833499
Target:  5'- gCUGGCGCGgUGGUCcuccacgaagagcgGCUCG-UCGGCGu -3'
miRNA:   3'- -GGUCGCGCgACUAG--------------UGGGCgAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 145724 0.66 0.828013
Target:  5'- -aAGCGCGCg---CGgCCGCUCaaGGCGc -3'
miRNA:   3'- ggUCGCGCGacuaGUgGGCGAG--CCGC- -5'
14625 3' -60.2 NC_003521.1 + 216828 0.67 0.795267
Target:  5'- -uGGCGCGCaggaGGUCgcaGCCCGCggCGGaCGa -3'
miRNA:   3'- ggUCGCGCGa---CUAG---UGGGCGa-GCC-GC- -5'
14625 3' -60.2 NC_003521.1 + 44593 0.67 0.795267
Target:  5'- gUCAGCGCGC-GA-CACCUGCagCuGCGa -3'
miRNA:   3'- -GGUCGCGCGaCUaGUGGGCGa-GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 109575 0.67 0.803665
Target:  5'- gCUAGCauGCGCgUGAagugCGCCaGCUCGGCc -3'
miRNA:   3'- -GGUCG--CGCG-ACUa---GUGGgCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 163009 0.67 0.795267
Target:  5'- -gAGCGCGCUGcUCACCaugaucuGCgagaaCGGCa -3'
miRNA:   3'- ggUCGCGCGACuAGUGGg------CGa----GCCGc -5'
14625 3' -60.2 NC_003521.1 + 150679 0.67 0.802831
Target:  5'- gCGGCGCcgcugcuGCUGGgugCugCUGCgccggCGGCGa -3'
miRNA:   3'- gGUCGCG-------CGACUa--GugGGCGa----GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 69187 0.67 0.78674
Target:  5'- gCGGcCGCGCUaGAcaUACCCGacgUCGGCGg -3'
miRNA:   3'- gGUC-GCGCGA-CUa-GUGGGCg--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 42962 0.67 0.78674
Target:  5'- cCCAGCgaGCGCg----ACCCGC-CGGCGc -3'
miRNA:   3'- -GGUCG--CGCGacuagUGGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 137043 0.67 0.77809
Target:  5'- aCCGGCG-GCUGAccUCAggcaCCGCcCGGCc -3'
miRNA:   3'- -GGUCGCgCGACU--AGUg---GGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 129232 0.67 0.77809
Target:  5'- uCCGGCGcCGCUG---GCCaCGCgCGGCa -3'
miRNA:   3'- -GGUCGC-GCGACuagUGG-GCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 138398 0.67 0.820045
Target:  5'- gCGGCGCGUcugGAUCGCCgUGUggaccagccucuUCGGCu -3'
miRNA:   3'- gGUCGCGCGa--CUAGUGG-GCG------------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 43566 0.67 0.811926
Target:  5'- gCCGGCGcCGC--GUCAagcaCCGCUCcucgGGCGg -3'
miRNA:   3'- -GGUCGC-GCGacUAGUg---GGCGAG----CCGC- -5'
14625 3' -60.2 NC_003521.1 + 63092 0.67 0.820045
Target:  5'- gCCGGCGCGCUGccCGCCCuC-CaGCa -3'
miRNA:   3'- -GGUCGCGCGACuaGUGGGcGaGcCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.