miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 141944 0.74 0.436675
Target:  5'- gCAGCGCGUgGGcgccCACCUGCUgGGCGa -3'
miRNA:   3'- gGUCGCGCGaCUa---GUGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 85248 0.74 0.394961
Target:  5'- gCCGGCGCGCaaauaacUGGcUACCCGCUCcGCGc -3'
miRNA:   3'- -GGUCGCGCG-------ACUaGUGGGCGAGcCGC- -5'
14625 3' -60.2 NC_003521.1 + 99600 0.77 0.288763
Target:  5'- gCGGCGCGUUGGUgACCUGCagcgccCGGCGg -3'
miRNA:   3'- gGUCGCGCGACUAgUGGGCGa-----GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 179530 0.78 0.252796
Target:  5'- aCgGGCGCGCaaaGUCGuCCCGCUCGGCu -3'
miRNA:   3'- -GgUCGCGCGac-UAGU-GGGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 55075 0.8 0.187517
Target:  5'- cCUAG-GCGCUccgGcgCACCCGCUCGGCGa -3'
miRNA:   3'- -GGUCgCGCGA---CuaGUGGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 116671 0.71 0.57193
Target:  5'- uCCAGcCGcCGCUG-UUGCCCGUcgUCGGUGg -3'
miRNA:   3'- -GGUC-GC-GCGACuAGUGGGCG--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 94073 0.71 0.57193
Target:  5'- gCGGCGUGuCUGAgUCACCCGga-GGCGa -3'
miRNA:   3'- gGUCGCGC-GACU-AGUGGGCgagCCGC- -5'
14625 3' -60.2 NC_003521.1 + 28593 0.69 0.667502
Target:  5'- cCCGGCgaGCGC-GAccUCACCCGCUacgUGGUGc -3'
miRNA:   3'- -GGUCG--CGCGaCU--AGUGGGCGA---GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 112414 0.7 0.657948
Target:  5'- aCCGGC-CGCcuuucgGAccgaCGCCCGCUCaGGCGg -3'
miRNA:   3'- -GGUCGcGCGa-----CUa---GUGGGCGAG-CCGC- -5'
14625 3' -60.2 NC_003521.1 + 49839 0.7 0.657948
Target:  5'- aCCuGCGC-CUG--CugCCGCUCGGCc -3'
miRNA:   3'- -GGuCGCGcGACuaGugGGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 201578 0.7 0.657948
Target:  5'- aCCGGCugGgGCUGAaCGCCCGCg-GGCc -3'
miRNA:   3'- -GGUCG--CgCGACUaGUGGGCGagCCGc -5'
14625 3' -60.2 NC_003521.1 + 138038 0.7 0.648376
Target:  5'- gCCGGCGCacgggGCUGuggGUCGCCCGCgaccgCcGCGg -3'
miRNA:   3'- -GGUCGCG-----CGAC---UAGUGGGCGa----GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 154148 0.7 0.648376
Target:  5'- gCCAGauacgacgaCGCGCUGAUCcucaACCUGUcgUCGGCc -3'
miRNA:   3'- -GGUC---------GCGCGACUAG----UGGGCG--AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 144248 0.7 0.647418
Target:  5'- -gGGCGCGCaGAUCAgcuaccacgccugUCUGCUgGGCGa -3'
miRNA:   3'- ggUCGCGCGaCUAGU-------------GGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 132460 0.7 0.642626
Target:  5'- uUCGGCGCGUccGGUCAgCCGUcuucggagaccgccgUCGGCGc -3'
miRNA:   3'- -GGUCGCGCGa-CUAGUgGGCG---------------AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 17142 0.7 0.629203
Target:  5'- gCCGGCGCGCU--UCGCCCGaccCUCccuGGCc -3'
miRNA:   3'- -GGUCGCGCGAcuAGUGGGC---GAG---CCGc -5'
14625 3' -60.2 NC_003521.1 + 154577 0.7 0.610995
Target:  5'- cUCAGCGCGauucucaaccgCACgCGCUCGGCGc -3'
miRNA:   3'- -GGUCGCGCgacua------GUGgGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 139060 0.71 0.590931
Target:  5'- aCGGCGcCGCaGAUCACCCuggcCUCGGgGc -3'
miRNA:   3'- gGUCGC-GCGaCUAGUGGGc---GAGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 207186 0.71 0.581415
Target:  5'- uCCAGCGgGau-GUgAgCCGCUCGGCGg -3'
miRNA:   3'- -GGUCGCgCgacUAgUgGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 128109 0.71 0.581415
Target:  5'- uCCAGCagGCGCUGcaucaugggGUCcgagggcgGCCCGCgcUCGGCGa -3'
miRNA:   3'- -GGUCG--CGCGAC---------UAG--------UGGGCG--AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.