miRNA display CGI


Results 41 - 60 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 55075 0.8 0.187517
Target:  5'- cCUAG-GCGCUccgGcgCACCCGCUCGGCGa -3'
miRNA:   3'- -GGUCgCGCGA---CuaGUGGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 59510 0.66 0.843475
Target:  5'- aCGGCGCcCUG---GCCCGCgggCGGCc -3'
miRNA:   3'- gGUCGCGcGACuagUGGGCGa--GCCGc -5'
14625 3' -60.2 NC_003521.1 + 63092 0.67 0.820045
Target:  5'- gCCGGCGCGCUGccCGCCCuC-CaGCa -3'
miRNA:   3'- -GGUCGCGCGACuaGUGGGcGaGcCGc -5'
14625 3' -60.2 NC_003521.1 + 68011 0.68 0.724047
Target:  5'- gCCAGCGUGUccUGGUCACUCGUcacaUCGaGUa -3'
miRNA:   3'- -GGUCGCGCG--ACUAGUGGGCG----AGC-CGc -5'
14625 3' -60.2 NC_003521.1 + 69187 0.67 0.78674
Target:  5'- gCGGcCGCGCUaGAcaUACCCGacgUCGGCGg -3'
miRNA:   3'- gGUC-GCGCGA-CUa-GUGGGCg--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 69290 0.66 0.865391
Target:  5'- aCCAGCGCGCag--C-CCCGacacagggCGGCGc -3'
miRNA:   3'- -GGUCGCGCGacuaGuGGGCga------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 70417 0.66 0.850956
Target:  5'- aCUAGCGUGCccGUCACCaCG-UCGGUa -3'
miRNA:   3'- -GGUCGCGCGacUAGUGG-GCgAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 72284 0.66 0.835825
Target:  5'- gCCAGCgccgccgccGCGCUGGccgccaGCCUGCU-GGCGu -3'
miRNA:   3'- -GGUCG---------CGCGACUag----UGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 72607 0.69 0.671318
Target:  5'- -gAGCGCGCUGcucaagcugcacaacAUCACCgUGCU-GGCGg -3'
miRNA:   3'- ggUCGCGCGAC---------------UAGUGG-GCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 72755 0.68 0.74242
Target:  5'- gCAGCcccccGCGuCUcGAgCACCCGCcgUCGGCGg -3'
miRNA:   3'- gGUCG-----CGC-GA-CUaGUGGGCG--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 74551 0.68 0.748774
Target:  5'- aCCAGcCGCGCcgugcgcgugcccgUGAgcacgGCCCGCUCgccgGGCGg -3'
miRNA:   3'- -GGUC-GCGCG--------------ACUag---UGGGCGAG----CCGC- -5'
14625 3' -60.2 NC_003521.1 + 74632 0.67 0.775473
Target:  5'- aCAGCGgGgUGGUgCGCgggacccuggagcgCCGCUCGGCc -3'
miRNA:   3'- gGUCGCgCgACUA-GUG--------------GGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 77079 0.66 0.865391
Target:  5'- -gAGCGcCGCUG--UugCCGC-CGGCGc -3'
miRNA:   3'- ggUCGC-GCGACuaGugGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 77717 0.68 0.732353
Target:  5'- gCGGCgguggucgugGCGCUGG-CGCCCGaggacgggccggcCUCGGCGu -3'
miRNA:   3'- gGUCG----------CGCGACUaGUGGGC-------------GAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 79083 0.67 0.803665
Target:  5'- aCCAGCucccccaCGCUGGcgaugaccUCGCgcaaCCGCUCGGUGu -3'
miRNA:   3'- -GGUCGc------GCGACU--------AGUG----GGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 85248 0.74 0.394961
Target:  5'- gCCGGCGCGCaaauaacUGGcUACCCGCUCcGCGc -3'
miRNA:   3'- -GGUCGCGCG-------ACUaGUGGGCGAGcCGC- -5'
14625 3' -60.2 NC_003521.1 + 87178 0.66 0.828013
Target:  5'- gCCGuGCaGCGCUccaccGAgacgCACCCGCU-GGCGc -3'
miRNA:   3'- -GGU-CG-CGCGA-----CUa---GUGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 88051 0.65 0.869579
Target:  5'- -gAGCGCGCggaugaggucgcggUGGUCggcggcGCCCGUgaccacgggccacUCGGCGa -3'
miRNA:   3'- ggUCGCGCG--------------ACUAG------UGGGCG-------------AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 89862 0.69 0.664639
Target:  5'- gCCAGCGCcgcgucgcgcgacuGCacgaUGAUCugACCgCGCUCGGCc -3'
miRNA:   3'- -GGUCGCG--------------CG----ACUAG--UGG-GCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 92444 0.66 0.834276
Target:  5'- cCCAGCcuccccgcacccCGCUcGGcUUGCCCGCUCGGgGg -3'
miRNA:   3'- -GGUCGc-----------GCGA-CU-AGUGGGCGAGCCgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.