miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 26758 0.72 0.531635
Target:  5'- gUCGGCGCGCUGGgaccucauguucagUUACCUGUcCGGCc -3'
miRNA:   3'- -GGUCGCGCGACU--------------AGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 27770 0.72 0.506859
Target:  5'- gCCgAGCGCGgaGGaagaaaccuacUCcgGCCCGCUCGGCc -3'
miRNA:   3'- -GG-UCGCGCgaCU-----------AG--UGGGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 28593 0.69 0.667502
Target:  5'- cCCGGCgaGCGC-GAccUCACCCGCUacgUGGUGc -3'
miRNA:   3'- -GGUCG--CGCGaCU--AGUGGGCGA---GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 29442 0.66 0.858263
Target:  5'- aCCAGCGCGUgggccaguucaUGAUCcgcgACCgGCUgCuGCGg -3'
miRNA:   3'- -GGUCGCGCG-----------ACUAG----UGGgCGA-GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 30802 0.68 0.751484
Target:  5'- gUAGCGCaCcGAggGCCCGC-CGGCGa -3'
miRNA:   3'- gGUCGCGcGaCUagUGGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 31664 0.67 0.77809
Target:  5'- cCCGGCGCGa-GGUgAgCCGCgauUCGGCu -3'
miRNA:   3'- -GGUCGCGCgaCUAgUgGGCG---AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 31923 0.69 0.714753
Target:  5'- gCAGCGCGC-GAUgACUCGCgcuccUCGGgGu -3'
miRNA:   3'- gGUCGCGCGaCUAgUGGGCG-----AGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 32741 0.66 0.86819
Target:  5'- aCCAGCGgGCgcgGAggaaccuccuucucuUCccuCCCGCUuccucaCGGCGa -3'
miRNA:   3'- -GGUCGCgCGa--CU---------------AGu--GGGCGA------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 33317 0.69 0.705397
Target:  5'- cCCA-CGUcacuGCUGGcacCACCCGCUgGGCGg -3'
miRNA:   3'- -GGUcGCG----CGACUa--GUGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 36508 0.66 0.843475
Target:  5'- aCCauGGCGUcggacuGC-GGUCACCCGCcggucgUCGGCa -3'
miRNA:   3'- -GG--UCGCG------CGaCUAGUGGGCG------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 36791 0.68 0.751484
Target:  5'- gCCA-CGCGCUGcggagcCGCUCGCggaCGGCGg -3'
miRNA:   3'- -GGUcGCGCGACua----GUGGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 41110 0.66 0.8539
Target:  5'- gCGGUgGUGCUGGUCACCCaguuGCUguccaaccacgugcaCGGCu -3'
miRNA:   3'- gGUCG-CGCGACUAGUGGG----CGA---------------GCCGc -5'
14625 3' -60.2 NC_003521.1 + 42962 0.67 0.78674
Target:  5'- cCCAGCgaGCGCg----ACCCGC-CGGCGc -3'
miRNA:   3'- -GGUCG--CGCGacuagUGGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 43566 0.67 0.811926
Target:  5'- gCCGGCGcCGC--GUCAagcaCCGCUCcucgGGCGg -3'
miRNA:   3'- -GGUCGC-GCGacUAGUg---GGCGAG----CCGC- -5'
14625 3' -60.2 NC_003521.1 + 44410 0.68 0.724047
Target:  5'- aCAGCGacugucugugcCGCUGccCGCCCaucgugacggcgGCUCGGCGa -3'
miRNA:   3'- gGUCGC-----------GCGACuaGUGGG------------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 44593 0.67 0.795267
Target:  5'- gUCAGCGCGC-GA-CACCUGCagCuGCGa -3'
miRNA:   3'- -GGUCGCGCGaCUaGUGGGCGa-GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 47595 0.67 0.77809
Target:  5'- cCCAG-GCGCUcc-CGCCCGaCUUGGCc -3'
miRNA:   3'- -GGUCgCGCGAcuaGUGGGC-GAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 49839 0.7 0.657948
Target:  5'- aCCuGCGC-CUG--CugCCGCUCGGCc -3'
miRNA:   3'- -GGuCGCGcGACuaGugGGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 53506 0.67 0.78674
Target:  5'- gCCGGUGCGCUGuuguccgacgCGgCCGCUCccaccgGGCu -3'
miRNA:   3'- -GGUCGCGCGACua--------GUgGGCGAG------CCGc -5'
14625 3' -60.2 NC_003521.1 + 54530 0.68 0.751484
Target:  5'- aCGGCGcCGCUGGg-GCCCGg-CGGCu -3'
miRNA:   3'- gGUCGC-GCGACUagUGGGCgaGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.