miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 196977 0.7 0.619617
Target:  5'- gCCGGgGCGCcugUGAcggGCCCGCggcCGGCGg -3'
miRNA:   3'- -GGUCgCGCG---ACUag-UGGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 196572 0.66 0.843475
Target:  5'- uCCGGCGUGaCgccgGA-CuCCCGCgcaCGGCGg -3'
miRNA:   3'- -GGUCGCGC-Ga---CUaGuGGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 196416 0.66 0.850956
Target:  5'- gCAGCGgcacagacaguCGCUG-UCGCCCgGgUCGGCc -3'
miRNA:   3'- gGUCGC-----------GCGACuAGUGGG-CgAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 196109 0.66 0.835825
Target:  5'- gCGGCGCGC-GGUauagAUCCGC-CGGCc -3'
miRNA:   3'- gGUCGCGCGaCUAg---UGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 191230 0.68 0.733272
Target:  5'- cCCAGCGcCGgUGA-CGCCUucCUCGGCa -3'
miRNA:   3'- -GGUCGC-GCgACUaGUGGGc-GAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 187597 0.72 0.54372
Target:  5'- gCCGGCGguCGCU--UCGCCCGCggacuccCGGCGa -3'
miRNA:   3'- -GGUCGC--GCGAcuAGUGGGCGa------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 183802 0.69 0.667502
Target:  5'- gCGGCGUGU---UCAUCCGCguggCGGCGu -3'
miRNA:   3'- gGUCGCGCGacuAGUGGGCGa---GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 182050 0.67 0.78674
Target:  5'- gCCGGCGCGCgc--CGCCCuGCagUGGCu -3'
miRNA:   3'- -GGUCGCGCGacuaGUGGG-CGa-GCCGc -5'
14625 3' -60.2 NC_003521.1 + 181850 0.72 0.54372
Target:  5'- uCUAGCG-GCUGAUUcgccacgcacgACCC-CUCGGCGa -3'
miRNA:   3'- -GGUCGCgCGACUAG-----------UGGGcGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 181467 0.66 0.850956
Target:  5'- cCCAGUcgGCGCaGAcgGCCCaucccaGCUCGGUGa -3'
miRNA:   3'- -GGUCG--CGCGaCUagUGGG------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 181464 0.68 0.769326
Target:  5'- uCCAGCG-GCUGGcgcgcCGCCUGCagcgUGGCGu -3'
miRNA:   3'- -GGUCGCgCGACUa----GUGGGCGa---GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 181081 0.68 0.759562
Target:  5'- cCCAGUaggugacGUGCUGAUaggccaugucCACCaGCUCGGCc -3'
miRNA:   3'- -GGUCG-------CGCGACUA----------GUGGgCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 179530 0.78 0.252796
Target:  5'- aCgGGCGCGCaaaGUCGuCCCGCUCGGCu -3'
miRNA:   3'- -GgUCGCGCGac-UAGU-GGGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 179070 0.66 0.843475
Target:  5'- gUCAGCGgGUcGcgUGCCCGUcgUCGGUGa -3'
miRNA:   3'- -GGUCGCgCGaCuaGUGGGCG--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 177668 0.66 0.843475
Target:  5'- gCGGCGCGUcGAUCgucaGCCCGCgCaGCu -3'
miRNA:   3'- gGUCGCGCGaCUAG----UGGGCGaGcCGc -5'
14625 3' -60.2 NC_003521.1 + 176484 0.66 0.835825
Target:  5'- cCCAGgGCcugcaGCUGGcUCAUCUGCUCGuGUa -3'
miRNA:   3'- -GGUCgCG-----CGACU-AGUGGGCGAGC-CGc -5'
14625 3' -60.2 NC_003521.1 + 176050 0.66 0.835825
Target:  5'- gCAG-GCGCUuggGAUCGCCCGgUgccgcgccggcCGGCGu -3'
miRNA:   3'- gGUCgCGCGA---CUAGUGGGCgA-----------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 175424 0.69 0.677032
Target:  5'- -aGGCGCGCgucUGAgUgGCgUGCUCGGCGu -3'
miRNA:   3'- ggUCGCGCG---ACU-AgUGgGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 175315 0.66 0.864686
Target:  5'- cCCAGCugacaGCGCUcgaugaaGGUCGCCUGCcUGGUc -3'
miRNA:   3'- -GGUCG-----CGCGA-------CUAGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 174386 0.68 0.724047
Target:  5'- aCCAGCGCGUccugCAguUCCaGCUCGGUGa -3'
miRNA:   3'- -GGUCGCGCGacuaGU--GGG-CGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.