miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 12748 0.66 0.835825
Target:  5'- uCCGGCGCcucggacgugaGCUGGg-ACCCGCgCGuGCGc -3'
miRNA:   3'- -GGUCGCG-----------CGACUagUGGGCGaGC-CGC- -5'
14625 3' -60.2 NC_003521.1 + 176484 0.66 0.835825
Target:  5'- cCCAGgGCcugcaGCUGGcUCAUCUGCUCGuGUa -3'
miRNA:   3'- -GGUCgCG-----CGACU-AGUGGGCGAGC-CGc -5'
14625 3' -60.2 NC_003521.1 + 29442 0.66 0.858263
Target:  5'- aCCAGCGCGUgggccaguucaUGAUCcgcgACCgGCUgCuGCGg -3'
miRNA:   3'- -GGUCGCGCG-----------ACUAG----UGGgCGA-GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 69290 0.66 0.865391
Target:  5'- aCCAGCGCGCag--C-CCCGacacagggCGGCGc -3'
miRNA:   3'- -GGUCGCGCGacuaGuGGGCga------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 153893 0.66 0.863272
Target:  5'- uCCAGCGCGCgguagGGgaacagCGCCgCGUgcagcuuccacuccUCGGCc -3'
miRNA:   3'- -GGUCGCGCGa----CUa-----GUGG-GCG--------------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 196109 0.66 0.835825
Target:  5'- gCGGCGCGC-GGUauagAUCCGC-CGGCc -3'
miRNA:   3'- gGUCGCGCGaCUAg---UGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 225012 0.66 0.865391
Target:  5'- cCCAGCaCGaUGAg---CCGCUCGGCGc -3'
miRNA:   3'- -GGUCGcGCgACUagugGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 179070 0.66 0.843475
Target:  5'- gUCAGCGgGUcGcgUGCCCGUcgUCGGUGa -3'
miRNA:   3'- -GGUCGCgCGaCuaGUGGGCG--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 41110 0.66 0.8539
Target:  5'- gCGGUgGUGCUGGUCACCCaguuGCUguccaaccacgugcaCGGCu -3'
miRNA:   3'- gGUCG-CGCGACUAGUGGG----CGA---------------GCCGc -5'
14625 3' -60.2 NC_003521.1 + 102843 0.66 0.865391
Target:  5'- -aAGCGCGCcaGggCGCCCGU--GGCGu -3'
miRNA:   3'- ggUCGCGCGa-CuaGUGGGCGagCCGC- -5'
14625 3' -60.2 NC_003521.1 + 87178 0.66 0.828013
Target:  5'- gCCGuGCaGCGCUccaccGAgacgCACCCGCU-GGCGc -3'
miRNA:   3'- -GGU-CG-CGCGA-----CUa---GUGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 96751 0.66 0.843475
Target:  5'- cCCAGCaCGUUGcccagCGCCgccaGCUCGGCc -3'
miRNA:   3'- -GGUCGcGCGACua---GUGGg---CGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 196572 0.66 0.843475
Target:  5'- uCCGGCGUGaCgccgGA-CuCCCGCgcaCGGCGg -3'
miRNA:   3'- -GGUCGCGC-Ga---CUaGuGGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 5547 0.66 0.835825
Target:  5'- gCGGCGCGUcGuUCcuCCCgguugcggGCUCGGCGg -3'
miRNA:   3'- gGUCGCGCGaCuAGu-GGG--------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 32741 0.66 0.86819
Target:  5'- aCCAGCGgGCgcgGAggaaccuccuucucuUCccuCCCGCUuccucaCGGCGa -3'
miRNA:   3'- -GGUCGCgCGa--CU---------------AGu--GGGCGA------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 72284 0.66 0.835825
Target:  5'- gCCAGCgccgccgccGCGCUGGccgccaGCCUGCU-GGCGu -3'
miRNA:   3'- -GGUCG---------CGCGACUag----UGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 113255 0.66 0.843475
Target:  5'- gCUGGUGaCGCUGAUCGCCgaGCaccuggccgaCGGCGu -3'
miRNA:   3'- -GGUCGC-GCGACUAGUGGg-CGa---------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 36508 0.66 0.843475
Target:  5'- aCCauGGCGUcggacuGC-GGUCACCCGCcggucgUCGGCa -3'
miRNA:   3'- -GG--UCGCG------CGaCUAGUGGGCG------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 176050 0.66 0.835825
Target:  5'- gCAG-GCGCUuggGAUCGCCCGgUgccgcgccggcCGGCGu -3'
miRNA:   3'- gGUCgCGCGA---CUAGUGGGCgA-----------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 136947 0.66 0.84873
Target:  5'- gCAGCccaucccccugucgGCGCUGAUCGCCaGCcUGGaCGa -3'
miRNA:   3'- gGUCG--------------CGCGACUAGUGGgCGaGCC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.