miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 88051 0.65 0.869579
Target:  5'- -gAGCGCGCggaugaggucgcggUGGUCggcggcGCCCGUgaccacgggccacUCGGCGa -3'
miRNA:   3'- ggUCGCGCG--------------ACUAG------UGGGCG-------------AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 110678 0.66 0.835825
Target:  5'- gCCAGCGCGUcGGUgGCCUcgaGCUUgaggucgaaGGCGc -3'
miRNA:   3'- -GGUCGCGCGaCUAgUGGG---CGAG---------CCGC- -5'
14625 3' -60.2 NC_003521.1 + 179070 0.66 0.843475
Target:  5'- gUCAGCGgGUcGcgUGCCCGUcgUCGGUGa -3'
miRNA:   3'- -GGUCGCgCGaCuaGUGGGCG--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 69290 0.66 0.865391
Target:  5'- aCCAGCGCGCag--C-CCCGacacagggCGGCGc -3'
miRNA:   3'- -GGUCGCGCGacuaGuGGGCga------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 133354 0.66 0.828013
Target:  5'- gCCGGaCGUGgaGAUCAgcacggUCCGC-CGGCa -3'
miRNA:   3'- -GGUC-GCGCgaCUAGU------GGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 149179 0.66 0.850956
Target:  5'- cUCGGCGCGC--GUCGCCa-C-CGGCGg -3'
miRNA:   3'- -GGUCGCGCGacUAGUGGgcGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 145984 0.66 0.828013
Target:  5'- gCUGGCGCGCUu----CCCGCUgcCGGCu -3'
miRNA:   3'- -GGUCGCGCGAcuaguGGGCGA--GCCGc -5'
14625 3' -60.2 NC_003521.1 + 92444 0.66 0.834276
Target:  5'- cCCAGCcuccccgcacccCGCUcGGcUUGCCCGCUCGGgGg -3'
miRNA:   3'- -GGUCGc-----------GCGA-CU-AGUGGGCGAGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 29442 0.66 0.858263
Target:  5'- aCCAGCGCGUgggccaguucaUGAUCcgcgACCgGCUgCuGCGg -3'
miRNA:   3'- -GGUCGCGCG-----------ACUAG----UGGgCGA-GcCGC- -5'
14625 3' -60.2 NC_003521.1 + 145724 0.66 0.828013
Target:  5'- -aAGCGCGCg---CGgCCGCUCaaGGCGc -3'
miRNA:   3'- ggUCGCGCGacuaGUgGGCGAG--CCGC- -5'
14625 3' -60.2 NC_003521.1 + 123442 0.66 0.828013
Target:  5'- aCAGCGCGUgccgCACCUgcaccgucagGCUgGGCGu -3'
miRNA:   3'- gGUCGCGCGacuaGUGGG----------CGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 41110 0.66 0.8539
Target:  5'- gCGGUgGUGCUGGUCACCCaguuGCUguccaaccacgugcaCGGCu -3'
miRNA:   3'- gGUCG-CGCGACUAGUGGG----CGA---------------GCCGc -5'
14625 3' -60.2 NC_003521.1 + 197863 0.66 0.865391
Target:  5'- gCCGGCGgGUcg--CGCUCGCUgGGCu -3'
miRNA:   3'- -GGUCGCgCGacuaGUGGGCGAgCCGc -5'
14625 3' -60.2 NC_003521.1 + 196109 0.66 0.835825
Target:  5'- gCGGCGCGC-GGUauagAUCCGC-CGGCc -3'
miRNA:   3'- gGUCGCGCGaCUAg---UGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 196416 0.66 0.850956
Target:  5'- gCAGCGgcacagacaguCGCUG-UCGCCCgGgUCGGCc -3'
miRNA:   3'- gGUCGC-----------GCGACuAGUGGG-CgAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 181467 0.66 0.850956
Target:  5'- cCCAGUcgGCGCaGAcgGCCCaucccaGCUCGGUGa -3'
miRNA:   3'- -GGUCG--CGCGaCUagUGGG------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 153893 0.66 0.863272
Target:  5'- uCCAGCGCGCgguagGGgaacagCGCCgCGUgcagcuuccacuccUCGGCc -3'
miRNA:   3'- -GGUCGCGCGa----CUa-----GUGG-GCG--------------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 102843 0.66 0.865391
Target:  5'- -aAGCGCGCcaGggCGCCCGU--GGCGu -3'
miRNA:   3'- ggUCGCGCGa-CuaGUGGGCGagCCGC- -5'
14625 3' -60.2 NC_003521.1 + 127227 0.66 0.833499
Target:  5'- gCUGGCGCGgUGGUCcuccacgaagagcgGCUCG-UCGGCGu -3'
miRNA:   3'- -GGUCGCGCgACUAG--------------UGGGCgAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 116869 0.66 0.850956
Target:  5'- aCCuGCGCGCgcagugGcgCGgCUGCggCGGCGc -3'
miRNA:   3'- -GGuCGCGCGa-----CuaGUgGGCGa-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.