miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 17142 0.7 0.629203
Target:  5'- gCCGGCGCGCU--UCGCCCGaccCUCccuGGCc -3'
miRNA:   3'- -GGUCGCGCGAcuAGUGGGC---GAG---CCGc -5'
14625 3' -60.2 NC_003521.1 + 187597 0.72 0.54372
Target:  5'- gCCGGCGguCGCU--UCGCCCGCggacuccCGGCGa -3'
miRNA:   3'- -GGUCGC--GCGAcuAGUGGGCGa------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 132184 0.71 0.562482
Target:  5'- aCguGCGCGCUGAUCGgcagCCGCcUGGCc -3'
miRNA:   3'- -GguCGCGCGACUAGUg---GGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 116671 0.71 0.57193
Target:  5'- uCCAGcCGcCGCUG-UUGCCCGUcgUCGGUGg -3'
miRNA:   3'- -GGUC-GC-GCGACuAGUGGGCG--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 94073 0.71 0.57193
Target:  5'- gCGGCGUGuCUGAgUCACCCGga-GGCGa -3'
miRNA:   3'- gGUCGCGC-GACU-AGUGGGCgagCCGC- -5'
14625 3' -60.2 NC_003521.1 + 128109 0.71 0.581415
Target:  5'- uCCAGCagGCGCUGcaucaugggGUCcgagggcgGCCCGCgcUCGGCGa -3'
miRNA:   3'- -GGUCG--CGCGAC---------UAG--------UGGGCG--AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 207186 0.71 0.581415
Target:  5'- uCCAGCGgGau-GUgAgCCGCUCGGCGg -3'
miRNA:   3'- -GGUCGCgCgacUAgUgGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 139060 0.71 0.590931
Target:  5'- aCGGCGcCGCaGAUCACCCuggcCUCGGgGc -3'
miRNA:   3'- gGUCGC-GCGaCUAGUGGGc---GAGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 154577 0.7 0.610995
Target:  5'- cUCAGCGCGauucucaaccgCACgCGCUCGGCGc -3'
miRNA:   3'- -GGUCGCGCgacua------GUGgGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 181850 0.72 0.54372
Target:  5'- uCUAGCG-GCUGAUUcgccacgcacgACCC-CUCGGCGa -3'
miRNA:   3'- -GGUCGCgCGACUAG-----------UGGGcGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 137613 0.72 0.525167
Target:  5'- aCC-GCGCGCUGGaCGCcuaCCGCUCGcGCa -3'
miRNA:   3'- -GGuCGCGCGACUaGUG---GGCGAGC-CGc -5'
14625 3' -60.2 NC_003521.1 + 132404 0.72 0.525167
Target:  5'- uCCGGCaGaCGCUGuuUCGCCUGUgCGGCGa -3'
miRNA:   3'- -GGUCG-C-GCGACu-AGUGGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 55075 0.8 0.187517
Target:  5'- cCUAG-GCGCUccgGcgCACCCGCUCGGCGa -3'
miRNA:   3'- -GGUCgCGCGA---CuaGUGGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 179530 0.78 0.252796
Target:  5'- aCgGGCGCGCaaaGUCGuCCCGCUCGGCu -3'
miRNA:   3'- -GgUCGCGCGac-UAGU-GGGCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 99600 0.77 0.288763
Target:  5'- gCGGCGCGUUGGUgACCUGCagcgccCGGCGg -3'
miRNA:   3'- gGUCGCGCGACUAgUGGGCGa-----GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 85248 0.74 0.394961
Target:  5'- gCCGGCGCGCaaauaacUGGcUACCCGCUCcGCGc -3'
miRNA:   3'- -GGUCGCGCG-------ACUaGUGGGCGAGcCGC- -5'
14625 3' -60.2 NC_003521.1 + 141944 0.74 0.436675
Target:  5'- gCAGCGCGUgGGcgccCACCUGCUgGGCGa -3'
miRNA:   3'- gGUCGCGCGaCUa---GUGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 18704 0.73 0.445148
Target:  5'- gCCGGCGCgauccgGCUGuggCugCCGCUggCGGCGg -3'
miRNA:   3'- -GGUCGCG------CGACua-GugGGCGA--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 136729 0.73 0.477272
Target:  5'- gCAGCGCGCcgccuuccgcguccUGccgCGCCCGCUCGaGCu -3'
miRNA:   3'- gGUCGCGCG--------------ACua-GUGGGCGAGC-CGc -5'
14625 3' -60.2 NC_003521.1 + 225884 0.72 0.497807
Target:  5'- uCCAuGCGCGuCUGGcgCugCCGCUCGcGCu -3'
miRNA:   3'- -GGU-CGCGC-GACUa-GugGGCGAGC-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.