miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 124999 0.81 0.155132
Target:  5'- gCCAGCGCcuGCUGAgcCACCCGCgccugagCGGCGg -3'
miRNA:   3'- -GGUCGCG--CGACUa-GUGGGCGa------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 127308 0.71 0.600475
Target:  5'- cCCAGC-CGCUGcgCACgCuCUCGGUGa -3'
miRNA:   3'- -GGUCGcGCGACuaGUGgGcGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 122611 0.7 0.610038
Target:  5'- cCCGGCGacgGCggcGGcCGCgCGCUCGGCGg -3'
miRNA:   3'- -GGUCGCg--CGa--CUaGUGgGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 197863 0.66 0.865391
Target:  5'- gCCGGCGgGUcg--CGCUCGCUgGGCu -3'
miRNA:   3'- -GGUCGCgCGacuaGUGGGCGAgCCGc -5'
14625 3' -60.2 NC_003521.1 + 205679 0.74 0.436675
Target:  5'- cCgGGCGCGUgGcgCACCCGCgcucagucgCGGCGa -3'
miRNA:   3'- -GgUCGCGCGaCuaGUGGGCGa--------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 16744 0.73 0.462366
Target:  5'- gCCGGCGCGCg---CGCCCGC-CGGa- -3'
miRNA:   3'- -GGUCGCGCGacuaGUGGGCGaGCCgc -5'
14625 3' -60.2 NC_003521.1 + 139309 0.72 0.506859
Target:  5'- gCAGCGCcuGCUGGUCGgCCGCgucUGGCc -3'
miRNA:   3'- gGUCGCG--CGACUAGUgGGCGa--GCCGc -5'
14625 3' -60.2 NC_003521.1 + 21587 0.72 0.528859
Target:  5'- cCCGGCGCuGCUGAccuggguccugcaacUCugCUGCcUGGCGa -3'
miRNA:   3'- -GGUCGCG-CGACU---------------AGugGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 172051 0.72 0.534415
Target:  5'- uCUAGCGCGCUGAggauguucugcgUCAggaCCGUcagCGGCGg -3'
miRNA:   3'- -GGUCGCGCGACU------------AGUg--GGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 135224 0.71 0.590931
Target:  5'- gCAGCGC-CUGAgcggcugCGCCgGCggCGGCGa -3'
miRNA:   3'- gGUCGCGcGACUa------GUGGgCGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 155146 0.71 0.562482
Target:  5'- gCGGCGCguGCUGGaCGCCgGCUCGGa- -3'
miRNA:   3'- gGUCGCG--CGACUaGUGGgCGAGCCgc -5'
14625 3' -60.2 NC_003521.1 + 18172 0.72 0.534415
Target:  5'- gCAGCguggagGCGCUGcgCGCCUGC-CGGCc -3'
miRNA:   3'- gGUCG------CGCGACuaGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 16083 0.78 0.236237
Target:  5'- cCCGaCGCGCUGGcCGCCUGCgUCGGCGa -3'
miRNA:   3'- -GGUcGCGCGACUaGUGGGCG-AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 104107 0.71 0.566256
Target:  5'- gCGGCGCGCUGccaguccucggcggcGUCcugcucgggcccGCCCuGCUCGGUGc -3'
miRNA:   3'- gGUCGCGCGAC---------------UAG------------UGGG-CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 19484 0.78 0.264358
Target:  5'- gCCAG-GUGCaGGUgGCCCGCUCGGUGu -3'
miRNA:   3'- -GGUCgCGCGaCUAgUGGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 26758 0.72 0.531635
Target:  5'- gUCGGCGCGCUGGgaccucauguucagUUACCUGUcCGGCc -3'
miRNA:   3'- -GGUCGCGCGACU--------------AGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 120833 0.71 0.57193
Target:  5'- gCCAGCgGCGCauGUCGCCCgGCUCGuCGa -3'
miRNA:   3'- -GGUCG-CGCGacUAGUGGG-CGAGCcGC- -5'
14625 3' -60.2 NC_003521.1 + 167603 0.7 0.610038
Target:  5'- gCGGCGCGCaGAggCGCCgcaggCGCUCGGgGu -3'
miRNA:   3'- gGUCGCGCGaCUa-GUGG-----GCGAGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 198755 0.75 0.36485
Target:  5'- gCCGuGCuCGCUGGUCGCgCCGCUCgugGGCGa -3'
miRNA:   3'- -GGU-CGcGCGACUAGUG-GGCGAG---CCGC- -5'
14625 3' -60.2 NC_003521.1 + 27770 0.72 0.506859
Target:  5'- gCCgAGCGCGgaGGaagaaaccuacUCcgGCCCGCUCGGCc -3'
miRNA:   3'- -GG-UCGCGCgaCU-----------AG--UGGGCGAGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.