miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 207698 0.7 0.619617
Target:  5'- aUCGGCGUGCUGGagaagGCCCGCuacgccgucaUCGGCu -3'
miRNA:   3'- -GGUCGCGCGACUag---UGGGCG----------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 122611 0.7 0.610038
Target:  5'- cCCGGCGacgGCggcGGcCGCgCGCUCGGCGg -3'
miRNA:   3'- -GGUCGCg--CGa--CUaGUGgGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 18172 0.72 0.534415
Target:  5'- gCAGCguggagGCGCUGcgCGCCUGC-CGGCc -3'
miRNA:   3'- gGUCG------CGCGACuaGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 198755 0.75 0.36485
Target:  5'- gCCGuGCuCGCUGGUCGCgCCGCUCgugGGCGa -3'
miRNA:   3'- -GGU-CGcGCGACUAGUG-GGCGAG---CCGC- -5'
14625 3' -60.2 NC_003521.1 + 203371 0.69 0.694098
Target:  5'- gCCcGCGCGCgagcccacagcGUCACCUucagagGCUCGGCGc -3'
miRNA:   3'- -GGuCGCGCGac---------UAGUGGG------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 15334 0.69 0.667502
Target:  5'- aUCAGCGCGCUGGUgcagCAgUCGCgacUGGUGa -3'
miRNA:   3'- -GGUCGCGCGACUA----GUgGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 127308 0.71 0.600475
Target:  5'- cCCAGC-CGCUGcgCACgCuCUCGGUGa -3'
miRNA:   3'- -GGUCGcGCGACuaGUGgGcGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 19484 0.78 0.264358
Target:  5'- gCCAG-GUGCaGGUgGCCCGCUCGGUGu -3'
miRNA:   3'- -GGUCgCGCGaCUAgUGGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 89862 0.69 0.664639
Target:  5'- gCCAGCGCcgcgucgcgcgacuGCacgaUGAUCugACCgCGCUCGGCc -3'
miRNA:   3'- -GGUCGCG--------------CG----ACUAG--UGG-GCGAGCCGc -5'
14625 3' -60.2 NC_003521.1 + 16083 0.78 0.236237
Target:  5'- cCCGaCGCGCUGGcCGCCUGCgUCGGCGa -3'
miRNA:   3'- -GGUcGCGCGACUaGUGGGCG-AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 167603 0.7 0.610038
Target:  5'- gCGGCGCGCaGAggCGCCgcaggCGCUCGGgGu -3'
miRNA:   3'- gGUCGCGCGaCUa-GUGG-----GCGAGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 106853 0.7 0.629203
Target:  5'- gCCAGCguccGCGCaUGGaCGCCCGUaCGGUGa -3'
miRNA:   3'- -GGUCG----CGCG-ACUaGUGGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 104107 0.71 0.566256
Target:  5'- gCGGCGCGCUGccaguccucggcggcGUCcugcucgggcccGCCCuGCUCGGUGc -3'
miRNA:   3'- gGUCGCGCGAC---------------UAG------------UGGG-CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 172051 0.72 0.534415
Target:  5'- uCUAGCGCGCUGAggauguucugcgUCAggaCCGUcagCGGCGg -3'
miRNA:   3'- -GGUCGCGCGACU------------AGUg--GGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 139309 0.72 0.506859
Target:  5'- gCAGCGCcuGCUGGUCGgCCGCgucUGGCc -3'
miRNA:   3'- gGUCGCG--CGACUAGUgGGCGa--GCCGc -5'
14625 3' -60.2 NC_003521.1 + 205679 0.74 0.436675
Target:  5'- cCgGGCGCGUgGcgCACCCGCgcucagucgCGGCGa -3'
miRNA:   3'- -GgUCGCGCGaCuaGUGGGCGa--------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 33317 0.69 0.705397
Target:  5'- cCCA-CGUcacuGCUGGcacCACCCGCUgGGCGg -3'
miRNA:   3'- -GGUcGCG----CGACUa--GUGGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 24479 0.69 0.695986
Target:  5'- gCCAGCGCGUgcugGAUCuACUggCGCUaCGaGCGg -3'
miRNA:   3'- -GGUCGCGCGa---CUAG-UGG--GCGA-GC-CGC- -5'
14625 3' -60.2 NC_003521.1 + 123961 0.69 0.677032
Target:  5'- gCCAcuGCGCGCgcaGGUCGuCgCGgUCGGCGg -3'
miRNA:   3'- -GGU--CGCGCGa--CUAGU-GgGCgAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 114853 0.69 0.667502
Target:  5'- gCGGUgugcgaacugGUGCUGA-CGCCCGCgUCGGCc -3'
miRNA:   3'- gGUCG----------CGCGACUaGUGGGCG-AGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.