Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14625 | 3' | -60.2 | NC_003521.1 | + | 21587 | 0.72 | 0.528859 |
Target: 5'- cCCGGCGCuGCUGAccuggguccugcaacUCugCUGCcUGGCGa -3' miRNA: 3'- -GGUCGCG-CGACU---------------AGugGGCGaGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 225884 | 0.72 | 0.497807 |
Target: 5'- uCCAuGCGCGuCUGGcgCugCCGCUCGcGCu -3' miRNA: 3'- -GGU-CGCGC-GACUa-GugGGCGAGC-CGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 132404 | 0.72 | 0.525167 |
Target: 5'- uCCGGCaGaCGCUGuuUCGCCUGUgCGGCGa -3' miRNA: 3'- -GGUCG-C-GCGACu-AGUGGGCGaGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 137613 | 0.72 | 0.525167 |
Target: 5'- aCC-GCGCGCUGGaCGCcuaCCGCUCGcGCa -3' miRNA: 3'- -GGuCGCGCGACUaGUG---GGCGAGC-CGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 181850 | 0.72 | 0.54372 |
Target: 5'- uCUAGCG-GCUGAUUcgccacgcacgACCC-CUCGGCGa -3' miRNA: 3'- -GGUCGCgCGACUAG-----------UGGGcGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 187597 | 0.72 | 0.54372 |
Target: 5'- gCCGGCGguCGCU--UCGCCCGCggacuccCGGCGa -3' miRNA: 3'- -GGUCGC--GCGAcuAGUGGGCGa------GCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 94073 | 0.71 | 0.57193 |
Target: 5'- gCGGCGUGuCUGAgUCACCCGga-GGCGa -3' miRNA: 3'- gGUCGCGC-GACU-AGUGGGCgagCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 116671 | 0.71 | 0.57193 |
Target: 5'- uCCAGcCGcCGCUG-UUGCCCGUcgUCGGUGg -3' miRNA: 3'- -GGUC-GC-GCGACuAGUGGGCG--AGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 132184 | 0.71 | 0.562482 |
Target: 5'- aCguGCGCGCUGAUCGgcagCCGCcUGGCc -3' miRNA: 3'- -GguCGCGCGACUAGUg---GGCGaGCCGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 155146 | 0.71 | 0.562482 |
Target: 5'- gCGGCGCguGCUGGaCGCCgGCUCGGa- -3' miRNA: 3'- gGUCGCG--CGACUaGUGGgCGAGCCgc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 128109 | 0.71 | 0.581415 |
Target: 5'- uCCAGCagGCGCUGcaucaugggGUCcgagggcgGCCCGCgcUCGGCGa -3' miRNA: 3'- -GGUCG--CGCGAC---------UAG--------UGGGCG--AGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 207186 | 0.71 | 0.581415 |
Target: 5'- uCCAGCGgGau-GUgAgCCGCUCGGCGg -3' miRNA: 3'- -GGUCGCgCgacUAgUgGGCGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 120833 | 0.71 | 0.57193 |
Target: 5'- gCCAGCgGCGCauGUCGCCCgGCUCGuCGa -3' miRNA: 3'- -GGUCG-CGCGacUAGUGGG-CGAGCcGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 135224 | 0.71 | 0.590931 |
Target: 5'- gCAGCGC-CUGAgcggcugCGCCgGCggCGGCGa -3' miRNA: 3'- gGUCGCGcGACUa------GUGGgCGa-GCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 127308 | 0.71 | 0.600475 |
Target: 5'- cCCAGC-CGCUGcgCACgCuCUCGGUGa -3' miRNA: 3'- -GGUCGcGCGACuaGUGgGcGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 139060 | 0.71 | 0.590931 |
Target: 5'- aCGGCGcCGCaGAUCACCCuggcCUCGGgGc -3' miRNA: 3'- gGUCGC-GCGaCUAGUGGGc---GAGCCgC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 104107 | 0.71 | 0.566256 |
Target: 5'- gCGGCGCGCUGccaguccucggcggcGUCcugcucgggcccGCCCuGCUCGGUGc -3' miRNA: 3'- gGUCGCGCGAC---------------UAG------------UGGG-CGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 112414 | 0.7 | 0.657948 |
Target: 5'- aCCGGC-CGCcuuucgGAccgaCGCCCGCUCaGGCGg -3' miRNA: 3'- -GGUCGcGCGa-----CUa---GUGGGCGAG-CCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 154577 | 0.7 | 0.610995 |
Target: 5'- cUCAGCGCGauucucaaccgCACgCGCUCGGCGc -3' miRNA: 3'- -GGUCGCGCgacua------GUGgGCGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 154148 | 0.7 | 0.648376 |
Target: 5'- gCCAGauacgacgaCGCGCUGAUCcucaACCUGUcgUCGGCc -3' miRNA: 3'- -GGUC---------GCGCGACUAG----UGGGCG--AGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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