miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 240136 0.67 0.803665
Target:  5'- cCCGGCGgGCgcgGAaagCGCUgGCUCauGGCGu -3'
miRNA:   3'- -GGUCGCgCGa--CUa--GUGGgCGAG--CCGC- -5'
14625 3' -60.2 NC_003521.1 + 237027 0.66 0.858263
Target:  5'- aUCAGCGUGCUgGAUCGCggUGCUCuGUGc -3'
miRNA:   3'- -GGUCGCGCGA-CUAGUGg-GCGAGcCGC- -5'
14625 3' -60.2 NC_003521.1 + 232390 0.68 0.751484
Target:  5'- aCCGucuCGCGCUGGcugCGCCUGCggcaCGGCa -3'
miRNA:   3'- -GGUc--GCGCGACUa--GUGGGCGa---GCCGc -5'
14625 3' -60.2 NC_003521.1 + 225884 0.72 0.497807
Target:  5'- uCCAuGCGCGuCUGGcgCugCCGCUCGcGCu -3'
miRNA:   3'- -GGU-CGCGC-GACUa-GugGGCGAGC-CGc -5'
14625 3' -60.2 NC_003521.1 + 225501 1.09 0.002057
Target:  5'- aCCAGCGCGCUGAUCACCCGCUCGGCGc -3'
miRNA:   3'- -GGUCGCGCGACUAGUGGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 225012 0.66 0.865391
Target:  5'- cCCAGCaCGaUGAg---CCGCUCGGCGc -3'
miRNA:   3'- -GGUCGcGCgACUagugGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 224083 0.68 0.760455
Target:  5'- uCCGGCGgGCg---CGCgCGC-CGGCGg -3'
miRNA:   3'- -GGUCGCgCGacuaGUGgGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 221907 0.68 0.751484
Target:  5'- gCCGGCGCGCggcgcCACCCuucggggcuGCcgCGGCGc -3'
miRNA:   3'- -GGUCGCGCGacua-GUGGG---------CGa-GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 218624 0.68 0.751484
Target:  5'- gCCAGCGCGCggcGGUaagcgGCCacgGC-CGGCGg -3'
miRNA:   3'- -GGUCGCGCGa--CUAg----UGGg--CGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 216828 0.67 0.795267
Target:  5'- -uGGCGCGCaggaGGUCgcaGCCCGCggCGGaCGa -3'
miRNA:   3'- ggUCGCGCGa---CUAG---UGGGCGa-GCC-GC- -5'
14625 3' -60.2 NC_003521.1 + 216179 0.69 0.705397
Target:  5'- aCCAGCgccaggacgaagGCGCUGAgCACCgGCgCGGgGu -3'
miRNA:   3'- -GGUCG------------CGCGACUaGUGGgCGaGCCgC- -5'
14625 3' -60.2 NC_003521.1 + 214633 0.69 0.714753
Target:  5'- aCCAGCGUGCUGAagaGCaCCGUgauGGCc -3'
miRNA:   3'- -GGUCGCGCGACUag-UG-GGCGag-CCGc -5'
14625 3' -60.2 NC_003521.1 + 207698 0.7 0.619617
Target:  5'- aUCGGCGUGCUGGagaagGCCCGCuacgccgucaUCGGCu -3'
miRNA:   3'- -GGUCGCGCGACUag---UGGGCG----------AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 207186 0.71 0.581415
Target:  5'- uCCAGCGgGau-GUgAgCCGCUCGGCGg -3'
miRNA:   3'- -GGUCGCgCgacUAgUgGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 205679 0.74 0.436675
Target:  5'- cCgGGCGCGUgGcgCACCCGCgcucagucgCGGCGa -3'
miRNA:   3'- -GgUCGCGCGaCuaGUGGGCGa--------GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 203927 0.67 0.806986
Target:  5'- gUAGCGCgugauGCgcuugugcccguacgUGGUCACCCGCUugcCGGCc -3'
miRNA:   3'- gGUCGCG-----CG---------------ACUAGUGGGCGA---GCCGc -5'
14625 3' -60.2 NC_003521.1 + 203371 0.69 0.694098
Target:  5'- gCCcGCGCGCgagcccacagcGUCACCUucagagGCUCGGCGc -3'
miRNA:   3'- -GGuCGCGCGac---------UAGUGGG------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 201578 0.7 0.657948
Target:  5'- aCCGGCugGgGCUGAaCGCCCGCg-GGCc -3'
miRNA:   3'- -GGUCG--CgCGACUaGUGGGCGagCCGc -5'
14625 3' -60.2 NC_003521.1 + 198755 0.75 0.36485
Target:  5'- gCCGuGCuCGCUGGUCGCgCCGCUCgugGGCGa -3'
miRNA:   3'- -GGU-CGcGCGACUAGUG-GGCGAG---CCGC- -5'
14625 3' -60.2 NC_003521.1 + 197863 0.66 0.865391
Target:  5'- gCCGGCGgGUcg--CGCUCGCUgGGCu -3'
miRNA:   3'- -GGUCGCgCGacuaGUGGGCGAgCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.