miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 153844 0.69 0.994455
Target:  5'- aCGGAUgGAcGCGCUCCagaccAGCAGg -3'
miRNA:   3'- cGCCUAgCUuCGCGAGGcaau-UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 159103 0.67 0.999306
Target:  5'- uUGGAgCGggGCGaCUCCGUgcucuccugGGACGu -3'
miRNA:   3'- cGCCUaGCuuCGC-GAGGCAa--------UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 166220 0.71 0.980247
Target:  5'- cGCGGcggCGAGGCGCgCCGgcc-GCGGg -3'
miRNA:   3'- -CGCCua-GCUUCGCGaGGCaauuUGUC- -5'
14626 3' -49.6 NC_003521.1 + 167120 0.72 0.966993
Target:  5'- cCGGGUCGcuGCGCUCCacgaagcucUUGAGCAGc -3'
miRNA:   3'- cGCCUAGCuuCGCGAGGc--------AAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 174224 0.67 0.999436
Target:  5'- cGCGGGUCGGgcaggGGCGCgUCGgagcuCAGa -3'
miRNA:   3'- -CGCCUAGCU-----UCGCGaGGCaauuuGUC- -5'
14626 3' -49.6 NC_003521.1 + 178723 0.75 0.918379
Target:  5'- cGCGGGcgcCGAAGCGUUCCcgGUUGGACuGg -3'
miRNA:   3'- -CGCCUa--GCUUCGCGAGG--CAAUUUGuC- -5'
14626 3' -49.6 NC_003521.1 + 178793 0.66 0.999633
Target:  5'- cGCGGGacgggCGAGGCauGC-CCGgcGGGCGGg -3'
miRNA:   3'- -CGCCUa----GCUUCG--CGaGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 178904 0.69 0.995216
Target:  5'- uGCGGAUCGuAGCGgUCacccaucacguCGggGAACGGc -3'
miRNA:   3'- -CGCCUAGCuUCGCgAG-----------GCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 179073 0.66 0.999544
Target:  5'- aGCGGGUCGc-GUGC-CCGUcgucgguGACAGu -3'
miRNA:   3'- -CGCCUAGCuuCGCGaGGCAau-----UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 181355 0.66 0.999544
Target:  5'- aGCGuGAUUGucGCGC-CCGgaucGGACAGc -3'
miRNA:   3'- -CGC-CUAGCuuCGCGaGGCaa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 186523 0.74 0.923993
Target:  5'- gGCGGuGUCGccagcGGGgGCUCCGUgggAGGCAGg -3'
miRNA:   3'- -CGCC-UAGC-----UUCgCGAGGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 196332 0.66 0.999707
Target:  5'- gGCcGGUUGuuGCGCUgcgucaCGUUGGACAGg -3'
miRNA:   3'- -CGcCUAGCuuCGCGAg-----GCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 197500 0.7 0.988919
Target:  5'- aCGGcgCGGAGCaguguucGUUCCGggGAACGGu -3'
miRNA:   3'- cGCCuaGCUUCG-------CGAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 202737 0.7 0.987603
Target:  5'- cGCGGca-GggGCGCggggaccCCGUgugGAACAGa -3'
miRNA:   3'- -CGCCuagCuuCGCGa------GGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 212231 0.67 0.999151
Target:  5'- aGCGGGU-GAGGuCGCgcucgCCGggGGACAc -3'
miRNA:   3'- -CGCCUAgCUUC-GCGa----GGCaaUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 212959 0.66 0.999817
Target:  5'- uGCGG-UCGAGGUcCUCCGUgccguuACGa -3'
miRNA:   3'- -CGCCuAGCUUCGcGAGGCAauu---UGUc -5'
14626 3' -49.6 NC_003521.1 + 216068 0.69 0.993953
Target:  5'- uGCGGGUCGAuugaugucgcguuacGGgGUgugCCGUUAAAUAc -3'
miRNA:   3'- -CGCCUAGCU---------------UCgCGa--GGCAAUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 222377 0.69 0.99589
Target:  5'- cGCGG-UCGAAGCGgCacaggCCGcgcgucUUGAGCAGg -3'
miRNA:   3'- -CGCCuAGCUUCGC-Ga----GGC------AAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 223687 0.66 0.999633
Target:  5'- uCGGG-CGAAGCGCgCCG----GCAGg -3'
miRNA:   3'- cGCCUaGCUUCGCGaGGCaauuUGUC- -5'
14626 3' -49.6 NC_003521.1 + 223942 0.67 0.999436
Target:  5'- aGgGGGUCGAGGCGg-CCGcgggGAACGc -3'
miRNA:   3'- -CgCCUAGCUUCGCgaGGCaa--UUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.