miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 97534 0.66 0.999817
Target:  5'- gGUGG-UCGAGGCGCUC----GAACAu -3'
miRNA:   3'- -CGCCuAGCUUCGCGAGgcaaUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 97576 0.66 0.999544
Target:  5'- cGCGGAUgGAGGUggugaugacguGCUC-GUUgGAGCAGg -3'
miRNA:   3'- -CGCCUAgCUUCG-----------CGAGgCAA-UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 102293 0.69 0.996485
Target:  5'- cGCGGcaagaaGUCGAGGUGCgCCGgacccAGCGGg -3'
miRNA:   3'- -CGCC------UAGCUUCGCGaGGCaau--UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 104007 0.68 0.998203
Target:  5'- cGCGGcgCGAGGCGUgaUGUUucaccAGCAGg -3'
miRNA:   3'- -CGCCuaGCUUCGCGagGCAAu----UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 104175 0.7 0.992638
Target:  5'- cGCGGGUCGcacGGCGUUgCGguagUAGACGu -3'
miRNA:   3'- -CGCCUAGCu--UCGCGAgGCa---AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 105019 0.67 0.998968
Target:  5'- aGCGGGaacgGGAGCGCUUCGa-GGACGGc -3'
miRNA:   3'- -CGCCUag--CUUCGCGAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 106246 0.66 0.999707
Target:  5'- uGgGGAUCuu-GCGCUcCCGU--GACAGc -3'
miRNA:   3'- -CgCCUAGcuuCGCGA-GGCAauUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 109288 0.66 0.999707
Target:  5'- cCGGGUagGAGGUGC-CC-UUGAGCAGg -3'
miRNA:   3'- cGCCUAg-CUUCGCGaGGcAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 111034 0.67 0.998968
Target:  5'- cGCGG-UCGGccucGGCGCgcaCGUgcgcgGGACAGg -3'
miRNA:   3'- -CGCCuAGCU----UCGCGag-GCAa----UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 122668 0.7 0.987603
Target:  5'- aGCGcGAUCGAGGCGC-CCagcaccGACAGc -3'
miRNA:   3'- -CGC-CUAGCUUCGCGaGGcaau--UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 125529 0.69 0.995216
Target:  5'- -aGGAUCGGcAGCGCUUccugCGUcAGACGGc -3'
miRNA:   3'- cgCCUAGCU-UCGCGAG----GCAaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 126291 0.69 0.99589
Target:  5'- aGCGGAaaUCGAuGGUGC-CCGUggcGGCGGu -3'
miRNA:   3'- -CGCCU--AGCU-UCGCGaGGCAau-UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 126693 0.66 0.999633
Target:  5'- cGCuGAUgGAGGCGaacaugCCGgUGAGCAGa -3'
miRNA:   3'- -CGcCUAgCUUCGCga----GGCaAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 130756 0.7 0.987603
Target:  5'- gGCGGG-CGcGAGCGCcgcgCCGgggGAGCAGa -3'
miRNA:   3'- -CGCCUaGC-UUCGCGa---GGCaa-UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 131109 0.67 0.999306
Target:  5'- gGCGGggCGgcGCGgCUgCCGggaagGGACAGc -3'
miRNA:   3'- -CGCCuaGCuuCGC-GA-GGCaa---UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 135795 0.74 0.939378
Target:  5'- gGCGGGccguccUCGAAGCGCUcCCGUUcccgcuccuGCAGc -3'
miRNA:   3'- -CGCCU------AGCUUCGCGA-GGCAAuu-------UGUC- -5'
14626 3' -49.6 NC_003521.1 + 135812 0.66 0.999733
Target:  5'- gGCGGAggGAGGCGCggcgacgaacgcucCCGUgcccaUGAGCAc -3'
miRNA:   3'- -CGCCUagCUUCGCGa-------------GGCA-----AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 140746 0.72 0.966993
Target:  5'- gGCGG-UCGAGGCGCccgccUCCGUgccGGGCGa -3'
miRNA:   3'- -CGCCuAGCUUCGCG-----AGGCAa--UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 148468 0.66 0.999633
Target:  5'- aGCGGAcgggcaggaCGGAGgGUUCCGggagcgAGGCGGg -3'
miRNA:   3'- -CGCCUa--------GCUUCgCGAGGCaa----UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 153610 0.66 0.999544
Target:  5'- aGCGGG-CGGAGCGaCUUCGUc-AACGu -3'
miRNA:   3'- -CGCCUaGCUUCGC-GAGGCAauUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.