Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14626 | 3' | -49.6 | NC_003521.1 | + | 167120 | 0.72 | 0.966993 |
Target: 5'- cCGGGUCGcuGCGCUCCacgaagcucUUGAGCAGc -3' miRNA: 3'- cGCCUAGCuuCGCGAGGc--------AAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 166220 | 0.71 | 0.980247 |
Target: 5'- cGCGGcggCGAGGCGCgCCGgcc-GCGGg -3' miRNA: 3'- -CGCCua-GCUUCGCGaGGCaauuUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 159103 | 0.67 | 0.999306 |
Target: 5'- uUGGAgCGggGCGaCUCCGUgcucuccugGGACGu -3' miRNA: 3'- cGCCUaGCuuCGC-GAGGCAa--------UUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 153844 | 0.69 | 0.994455 |
Target: 5'- aCGGAUgGAcGCGCUCCagaccAGCAGg -3' miRNA: 3'- cGCCUAgCUuCGCGAGGcaau-UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 153610 | 0.66 | 0.999544 |
Target: 5'- aGCGGG-CGGAGCGaCUUCGUc-AACGu -3' miRNA: 3'- -CGCCUaGCUUCGC-GAGGCAauUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 148468 | 0.66 | 0.999633 |
Target: 5'- aGCGGAcgggcaggaCGGAGgGUUCCGggagcgAGGCGGg -3' miRNA: 3'- -CGCCUa--------GCUUCgCGAGGCaa----UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 140746 | 0.72 | 0.966993 |
Target: 5'- gGCGG-UCGAGGCGCccgccUCCGUgccGGGCGa -3' miRNA: 3'- -CGCCuAGCUUCGCG-----AGGCAa--UUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 135812 | 0.66 | 0.999733 |
Target: 5'- gGCGGAggGAGGCGCggcgacgaacgcucCCGUgcccaUGAGCAc -3' miRNA: 3'- -CGCCUagCUUCGCGa-------------GGCA-----AUUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 135795 | 0.74 | 0.939378 |
Target: 5'- gGCGGGccguccUCGAAGCGCUcCCGUUcccgcuccuGCAGc -3' miRNA: 3'- -CGCCU------AGCUUCGCGA-GGCAAuu-------UGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 131109 | 0.67 | 0.999306 |
Target: 5'- gGCGGggCGgcGCGgCUgCCGggaagGGACAGc -3' miRNA: 3'- -CGCCuaGCuuCGC-GA-GGCaa---UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 130756 | 0.7 | 0.987603 |
Target: 5'- gGCGGG-CGcGAGCGCcgcgCCGgggGAGCAGa -3' miRNA: 3'- -CGCCUaGC-UUCGCGa---GGCaa-UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 126693 | 0.66 | 0.999633 |
Target: 5'- cGCuGAUgGAGGCGaacaugCCGgUGAGCAGa -3' miRNA: 3'- -CGcCUAgCUUCGCga----GGCaAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 126291 | 0.69 | 0.99589 |
Target: 5'- aGCGGAaaUCGAuGGUGC-CCGUggcGGCGGu -3' miRNA: 3'- -CGCCU--AGCU-UCGCGaGGCAau-UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 125529 | 0.69 | 0.995216 |
Target: 5'- -aGGAUCGGcAGCGCUUccugCGUcAGACGGc -3' miRNA: 3'- cgCCUAGCU-UCGCGAG----GCAaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 122668 | 0.7 | 0.987603 |
Target: 5'- aGCGcGAUCGAGGCGC-CCagcaccGACAGc -3' miRNA: 3'- -CGC-CUAGCUUCGCGaGGcaau--UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 111034 | 0.67 | 0.998968 |
Target: 5'- cGCGG-UCGGccucGGCGCgcaCGUgcgcgGGACAGg -3' miRNA: 3'- -CGCCuAGCU----UCGCGag-GCAa----UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 109288 | 0.66 | 0.999707 |
Target: 5'- cCGGGUagGAGGUGC-CC-UUGAGCAGg -3' miRNA: 3'- cGCCUAg-CUUCGCGaGGcAAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 106246 | 0.66 | 0.999707 |
Target: 5'- uGgGGAUCuu-GCGCUcCCGU--GACAGc -3' miRNA: 3'- -CgCCUAGcuuCGCGA-GGCAauUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 105019 | 0.67 | 0.998968 |
Target: 5'- aGCGGGaacgGGAGCGCUUCGa-GGACGGc -3' miRNA: 3'- -CGCCUag--CUUCGCGAGGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 104175 | 0.7 | 0.992638 |
Target: 5'- cGCGGGUCGcacGGCGUUgCGguagUAGACGu -3' miRNA: 3'- -CGCCUAGCu--UCGCGAgGCa---AUUUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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