miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 240225 0.67 0.999436
Target:  5'- gGCGGAUCGGAGUccGCaaCGg-GAACGGc -3'
miRNA:   3'- -CGCCUAGCUUCG--CGagGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 237034 0.69 0.994455
Target:  5'- uGCuGGAUCGcGGUGCUCUGUgccGCGa -3'
miRNA:   3'- -CG-CCUAGCuUCGCGAGGCAauuUGUc -5'
14626 3' -49.6 NC_003521.1 + 235958 0.66 0.999817
Target:  5'- aGCGGAUCGAGGcCGCgauucgaCGUc-GACGc -3'
miRNA:   3'- -CGCCUAGCUUC-GCGag-----GCAauUUGUc -5'
14626 3' -49.6 NC_003521.1 + 225719 1.12 0.013141
Target:  5'- uGCGGAUCGAAGCGCUCCGUUAAACAGa -3'
miRNA:   3'- -CGCCUAGCUUCGCGAGGCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 223942 0.67 0.999436
Target:  5'- aGgGGGUCGAGGCGg-CCGcgggGAACGc -3'
miRNA:   3'- -CgCCUAGCUUCGCgaGGCaa--UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 223687 0.66 0.999633
Target:  5'- uCGGG-CGAAGCGCgCCG----GCAGg -3'
miRNA:   3'- cGCCUaGCUUCGCGaGGCaauuUGUC- -5'
14626 3' -49.6 NC_003521.1 + 222377 0.69 0.99589
Target:  5'- cGCGG-UCGAAGCGgCacaggCCGcgcgucUUGAGCAGg -3'
miRNA:   3'- -CGCCuAGCUUCGC-Ga----GGC------AAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 216068 0.69 0.993953
Target:  5'- uGCGGGUCGAuugaugucgcguuacGGgGUgugCCGUUAAAUAc -3'
miRNA:   3'- -CGCCUAGCU---------------UCgCGa--GGCAAUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 212959 0.66 0.999817
Target:  5'- uGCGG-UCGAGGUcCUCCGUgccguuACGa -3'
miRNA:   3'- -CGCCuAGCUUCGcGAGGCAauu---UGUc -5'
14626 3' -49.6 NC_003521.1 + 212231 0.67 0.999151
Target:  5'- aGCGGGU-GAGGuCGCgcucgCCGggGGACAc -3'
miRNA:   3'- -CGCCUAgCUUC-GCGa----GGCaaUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 202737 0.7 0.987603
Target:  5'- cGCGGca-GggGCGCggggaccCCGUgugGAACAGa -3'
miRNA:   3'- -CGCCuagCuuCGCGa------GGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 197500 0.7 0.988919
Target:  5'- aCGGcgCGGAGCaguguucGUUCCGggGAACGGu -3'
miRNA:   3'- cGCCuaGCUUCG-------CGAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 196332 0.66 0.999707
Target:  5'- gGCcGGUUGuuGCGCUgcgucaCGUUGGACAGg -3'
miRNA:   3'- -CGcCUAGCuuCGCGAg-----GCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 186523 0.74 0.923993
Target:  5'- gGCGGuGUCGccagcGGGgGCUCCGUgggAGGCAGg -3'
miRNA:   3'- -CGCC-UAGC-----UUCgCGAGGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 181355 0.66 0.999544
Target:  5'- aGCGuGAUUGucGCGC-CCGgaucGGACAGc -3'
miRNA:   3'- -CGC-CUAGCuuCGCGaGGCaa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 179073 0.66 0.999544
Target:  5'- aGCGGGUCGc-GUGC-CCGUcgucgguGACAGu -3'
miRNA:   3'- -CGCCUAGCuuCGCGaGGCAau-----UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 178904 0.69 0.995216
Target:  5'- uGCGGAUCGuAGCGgUCacccaucacguCGggGAACGGc -3'
miRNA:   3'- -CGCCUAGCuUCGCgAG-----------GCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 178793 0.66 0.999633
Target:  5'- cGCGGGacgggCGAGGCauGC-CCGgcGGGCGGg -3'
miRNA:   3'- -CGCCUa----GCUUCG--CGaGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 178723 0.75 0.918379
Target:  5'- cGCGGGcgcCGAAGCGUUCCcgGUUGGACuGg -3'
miRNA:   3'- -CGCCUa--GCUUCGCGAGG--CAAUUUGuC- -5'
14626 3' -49.6 NC_003521.1 + 174224 0.67 0.999436
Target:  5'- cGCGGGUCGGgcaggGGCGCgUCGgagcuCAGa -3'
miRNA:   3'- -CGCCUAGCU-----UCGCGaGGCaauuuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.