miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 104215 0.67 0.813903
Target:  5'- gUGCUGcUGCAGCccagcgaggACGUGgaGCUgCGCGa -3'
miRNA:   3'- -ACGACaACGUCG---------UGCGCggCGA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 110310 0.67 0.808873
Target:  5'- cUGCUcggGCAGCcgcagggccaucaugACGCgGCCGCgcUCGCGg -3'
miRNA:   3'- -ACGAcaaCGUCG---------------UGCG-CGGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 162583 0.67 0.808873
Target:  5'- aGCUGgacgUGCAGCGCuucugcaaggugccCGUCGCUCaggGCGg -3'
miRNA:   3'- aCGACa---ACGUCGUGc-------------GCGGCGAG---CGC- -5'
14626 5' -59.4 NC_003521.1 + 169018 0.67 0.80549
Target:  5'- -uCUGUUGUuuuguGCGCGCGCCGgUCaaGCu -3'
miRNA:   3'- acGACAACGu----CGUGCGCGGCgAG--CGc -5'
14626 5' -59.4 NC_003521.1 + 118150 0.67 0.80549
Target:  5'- aGCUGUcGguGCugGgCGCCucgaUCGCGc -3'
miRNA:   3'- aCGACAaCguCGugC-GCGGcg--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 30638 0.67 0.80549
Target:  5'- cGCcaccgGCGGCGCGC-CUGCUCGUc -3'
miRNA:   3'- aCGacaa-CGUCGUGCGcGGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 130127 0.67 0.80549
Target:  5'- cUGCgucGUcgGCGGCGC-CGCCGCUgcCGCc -3'
miRNA:   3'- -ACGa--CAa-CGUCGUGcGCGGCGA--GCGc -5'
14626 5' -59.4 NC_003521.1 + 136620 0.67 0.80549
Target:  5'- gGCUGcaGCAGCACGUaaucgGCCaCgggCGCGg -3'
miRNA:   3'- aCGACaaCGUCGUGCG-----CGGcGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 77074 0.67 0.80549
Target:  5'- cUGCuccuUGUcgaGCAGCAUGCGgCGCauggggUCGCGg -3'
miRNA:   3'- -ACG----ACAa--CGUCGUGCGCgGCG------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 91700 0.67 0.80549
Target:  5'- gGCgUGcUGCGGUcuGCGUGCCGCUCc-- -3'
miRNA:   3'- aCG-ACaACGUCG--UGCGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 119593 0.67 0.80549
Target:  5'- cGCUGggcggcgggUGCAGCGucuCGUGCUGCagGUGg -3'
miRNA:   3'- aCGACa--------ACGUCGU---GCGCGGCGagCGC- -5'
14626 5' -59.4 NC_003521.1 + 124004 0.67 0.80549
Target:  5'- aGCUGgaucagGUGGUAgGUGCCGCggUGCGu -3'
miRNA:   3'- aCGACaa----CGUCGUgCGCGGCGa-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 178696 0.67 0.800372
Target:  5'- cGCUGUUGCAcacGCAUugguuccccgcgcggGCGCCGaa-GCGu -3'
miRNA:   3'- aCGACAACGU---CGUG---------------CGCGGCgagCGC- -5'
14626 5' -59.4 NC_003521.1 + 225004 0.67 0.796932
Target:  5'- cGCacUUGCccAGCACGaugaGCCGCUCgGCGc -3'
miRNA:   3'- aCGacAACG--UCGUGCg---CGGCGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 123921 0.67 0.796932
Target:  5'- cGCUGUucuccaccaguUGCAGCG-GCGCCGauaGCa -3'
miRNA:   3'- aCGACA-----------ACGUCGUgCGCGGCgagCGc -5'
14626 5' -59.4 NC_003521.1 + 70256 0.67 0.796932
Target:  5'- aGCUGguggggUGCAGCACGgGCagg-CGCa -3'
miRNA:   3'- aCGACa-----ACGUCGUGCgCGgcgaGCGc -5'
14626 5' -59.4 NC_003521.1 + 167675 0.67 0.796932
Target:  5'- gGCcGagGCGGCGC-CGCCGC-CGCu -3'
miRNA:   3'- aCGaCaaCGUCGUGcGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 87146 0.67 0.796932
Target:  5'- aGgUGUUGgAGCGgGCGCaGUUCGUGc -3'
miRNA:   3'- aCgACAACgUCGUgCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 111845 0.67 0.796932
Target:  5'- cGCUGcUGCgcaaAGCGC-CGCCGUacuUCGUGg -3'
miRNA:   3'- aCGACaACG----UCGUGcGCGGCG---AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 119536 0.67 0.796068
Target:  5'- gGUUGUgccGCAGCACcaccucgGCGCCGUgCGUa -3'
miRNA:   3'- aCGACAa--CGUCGUG-------CGCGGCGaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.