miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 107002 0.66 0.835843
Target:  5'- aUGgUGUUGCGGCAC-UGCUGCUUccagacguucacgaGCGc -3'
miRNA:   3'- -ACgACAACGUCGUGcGCGGCGAG--------------CGC- -5'
14626 5' -59.4 NC_003521.1 + 142299 0.66 0.830269
Target:  5'- cGCUGcaGCGGCccagccgcGCGCGUCG-UCGCa -3'
miRNA:   3'- aCGACaaCGUCG--------UGCGCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 355 0.66 0.830269
Target:  5'- aGCUGccggagGCGGCGCcuGCGaCCGCUgcccgccucaCGCGg -3'
miRNA:   3'- aCGACaa----CGUCGUG--CGC-GGCGA----------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 196311 0.66 0.830269
Target:  5'- aUGCUGgccaUGCAGCGCauGgGCCGgUUGUu -3'
miRNA:   3'- -ACGACa---ACGUCGUG--CgCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 172275 0.66 0.830269
Target:  5'- cUGCUGcUGaUAGUugGCgGCCGCUgcCGCc -3'
miRNA:   3'- -ACGACaAC-GUCGugCG-CGGCGA--GCGc -5'
14626 5' -59.4 NC_003521.1 + 139360 0.66 0.830269
Target:  5'- gUGUUGUaGCAGCugGCGaagagCGC-CGUGc -3'
miRNA:   3'- -ACGACAaCGUCGugCGCg----GCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 164430 0.66 0.830269
Target:  5'- cGCUGgugcuaGCAGCGCcacCGCgGC-CGCGg -3'
miRNA:   3'- aCGACaa----CGUCGUGc--GCGgCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 104163 0.66 0.830269
Target:  5'- cUGCgGcgGCGGCGCGgGUCGCacggcgUUGCGg -3'
miRNA:   3'- -ACGaCaaCGUCGUGCgCGGCG------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 223657 0.66 0.830269
Target:  5'- aGCUGc--CAGCGCuGCGCCucggcCUCGCGc -3'
miRNA:   3'- aCGACaacGUCGUG-CGCGGc----GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 167684 0.66 0.830269
Target:  5'- cGCgGUUGCGGUgACGa--CGCUCGUGg -3'
miRNA:   3'- aCGaCAACGUCG-UGCgcgGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 207774 0.66 0.830269
Target:  5'- cGCUGg-GCGGCauccACGUGCUGCUCuaugGCa -3'
miRNA:   3'- aCGACaaCGUCG----UGCGCGGCGAG----CGc -5'
14626 5' -59.4 NC_003521.1 + 122531 0.67 0.822165
Target:  5'- gGUUGUUGCGGCgGCGUcccuagagGUCGC-CGCa -3'
miRNA:   3'- aCGACAACGUCG-UGCG--------CGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 5529 0.67 0.822165
Target:  5'- aGCgacgGUgacgGCAGCcgGCGCgGCCGC-CGCc -3'
miRNA:   3'- aCGa---CAa---CGUCG--UGCG-CGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 53195 0.67 0.822165
Target:  5'- gGCca--GCGGCGCGCgGCCcgGCUCGCc -3'
miRNA:   3'- aCGacaaCGUCGUGCG-CGG--CGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 129218 0.67 0.822165
Target:  5'- cGCgugGUggGCAGUcCgGCGCCGCUgGCc -3'
miRNA:   3'- aCGa--CAa-CGUCGuG-CGCGGCGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 151885 0.67 0.817227
Target:  5'- cGCUGUgcUGCAGCAguuucccgaagcuguCGCGCaCGUUCa-- -3'
miRNA:   3'- aCGACA--ACGUCGU---------------GCGCG-GCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 138034 0.67 0.813903
Target:  5'- aGCUG--GCGGcCGCcgGCGCCGUcaUCGCGc -3'
miRNA:   3'- aCGACaaCGUC-GUG--CGCGGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 98898 0.67 0.813903
Target:  5'- cGCUGcacggucagGCGGCuguagUGCGuCUGCUCGCGc -3'
miRNA:   3'- aCGACaa-------CGUCGu----GCGC-GGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 98880 0.67 0.813903
Target:  5'- cGCUcgUGCuAGgGgGCGCCGUcgUCGCGg -3'
miRNA:   3'- aCGAcaACG-UCgUgCGCGGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 104215 0.67 0.813903
Target:  5'- gUGCUGcUGCAGCccagcgaggACGUGgaGCUgCGCGa -3'
miRNA:   3'- -ACGACaACGUCG---------UGCGCggCGA-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.