miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 142299 0.66 0.830269
Target:  5'- cGCUGcaGCGGCccagccgcGCGCGUCG-UCGCa -3'
miRNA:   3'- aCGACaaCGUCG--------UGCGCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 127542 0.66 0.845973
Target:  5'- gUGCgGcgGCAGCACGCcgucgGCCagguGCUCgGCGa -3'
miRNA:   3'- -ACGaCaaCGUCGUGCG-----CGG----CGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 145251 0.66 0.845205
Target:  5'- gGCUGccUGCAGgGCGCcuccucgGCCucggcggccaGCUCGCGc -3'
miRNA:   3'- aCGACa-ACGUCgUGCG-------CGG----------CGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 211566 0.66 0.838207
Target:  5'- aGCca--GUAGCGCGCa-CGCUCGCGg -3'
miRNA:   3'- aCGacaaCGUCGUGCGcgGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 226336 0.66 0.838207
Target:  5'- gUGCa--UGguGCGCGCGCC-C-CGCGg -3'
miRNA:   3'- -ACGacaACguCGUGCGCGGcGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 114932 0.66 0.838207
Target:  5'- aGCg---GCuGCugGagaGCUGCUCGCGc -3'
miRNA:   3'- aCGacaaCGuCGugCg--CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 49008 0.66 0.838207
Target:  5'- gGCgucguagGggGCAGUACagucaCGCCGUUUGCGg -3'
miRNA:   3'- aCGa------CaaCGUCGUGc----GCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 31420 0.66 0.838207
Target:  5'- aUGCUGgcgUGCAGCAgGCGgaugaUGCgcagCGCc -3'
miRNA:   3'- -ACGACa--ACGUCGUgCGCg----GCGa---GCGc -5'
14626 5' -59.4 NC_003521.1 + 107002 0.66 0.835843
Target:  5'- aUGgUGUUGCGGCAC-UGCUGCUUccagacguucacgaGCGc -3'
miRNA:   3'- -ACgACAACGUCGUGcGCGGCGAG--------------CGC- -5'
14626 5' -59.4 NC_003521.1 + 223657 0.66 0.830269
Target:  5'- aGCUGc--CAGCGCuGCGCCucggcCUCGCGc -3'
miRNA:   3'- aCGACaacGUCGUG-CGCGGc----GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 167684 0.66 0.830269
Target:  5'- cGCgGUUGCGGUgACGa--CGCUCGUGg -3'
miRNA:   3'- aCGaCAACGUCG-UGCgcgGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 225004 0.67 0.796932
Target:  5'- cGCacUUGCccAGCACGaugaGCCGCUCgGCGc -3'
miRNA:   3'- aCGacAACG--UCGUGCg---CGGCGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 123921 0.67 0.796932
Target:  5'- cGCUGUucuccaccaguUGCAGCG-GCGCCGauaGCa -3'
miRNA:   3'- aCGACA-----------ACGUCGUgCGCGGCgagCGc -5'
14626 5' -59.4 NC_003521.1 + 70256 0.67 0.796932
Target:  5'- aGCUGguggggUGCAGCACGgGCagg-CGCa -3'
miRNA:   3'- aCGACa-----ACGUCGUGCgCGgcgaGCGc -5'
14626 5' -59.4 NC_003521.1 + 119536 0.67 0.796068
Target:  5'- gGUUGUgccGCAGCACcaccucgGCGCCGUgCGUa -3'
miRNA:   3'- aCGACAa--CGUCGUG-------CGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 126952 0.67 0.788238
Target:  5'- cGCUGUgccgccGCGGaaccCGCGCCGUcgUCGCc -3'
miRNA:   3'- aCGACAa-----CGUCgu--GCGCGGCG--AGCGc -5'
14626 5' -59.4 NC_003521.1 + 239377 0.67 0.788238
Target:  5'- gUGCUGccacCGGCG-GCGCaGCUCGCGg -3'
miRNA:   3'- -ACGACaac-GUCGUgCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 129218 0.67 0.822165
Target:  5'- cGCgugGUggGCAGUcCgGCGCCGCUgGCc -3'
miRNA:   3'- aCGa--CAa-CGUCGuG-CGCGGCGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 87146 0.67 0.796932
Target:  5'- aGgUGUUGgAGCGgGCGCaGUUCGUGc -3'
miRNA:   3'- aCgACAACgUCGUgCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 104215 0.67 0.813903
Target:  5'- gUGCUGcUGCAGCccagcgaggACGUGgaGCUgCGCGa -3'
miRNA:   3'- -ACGACaACGUCG---------UGCGCggCGA-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.