miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 196311 0.66 0.830269
Target:  5'- aUGCUGgccaUGCAGCGCauGgGCCGgUUGUu -3'
miRNA:   3'- -ACGACa---ACGUCGUG--CgCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 172275 0.66 0.830269
Target:  5'- cUGCUGcUGaUAGUugGCgGCCGCUgcCGCc -3'
miRNA:   3'- -ACGACaAC-GUCGugCG-CGGCGA--GCGc -5'
14626 5' -59.4 NC_003521.1 + 42804 0.66 0.845973
Target:  5'- gGCg---GCuGCACGCGCCGCaacgGCa -3'
miRNA:   3'- aCGacaaCGuCGUGCGCGGCGag--CGc -5'
14626 5' -59.4 NC_003521.1 + 31420 0.66 0.838207
Target:  5'- aUGCUGgcgUGCAGCAgGCGgaugaUGCgcagCGCc -3'
miRNA:   3'- -ACGACa--ACGUCGUgCGCg----GCGa---GCGc -5'
14626 5' -59.4 NC_003521.1 + 74634 0.66 0.845973
Target:  5'- aGCggggUGguGCGCgggacccuggaGCGCCGCUCGg- -3'
miRNA:   3'- aCGaca-ACguCGUG-----------CGCGGCGAGCgc -5'
14626 5' -59.4 NC_003521.1 + 149061 0.66 0.845973
Target:  5'- cGCUGggcuucgacGCGGC-CGCGCU-CUCGCa -3'
miRNA:   3'- aCGACaa-------CGUCGuGCGCGGcGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 112396 0.66 0.853562
Target:  5'- gGCUGgcGCAGUGCGCcgaccgGCCGCcuuUCGg- -3'
miRNA:   3'- aCGACaaCGUCGUGCG------CGGCG---AGCgc -5'
14626 5' -59.4 NC_003521.1 + 127542 0.66 0.845973
Target:  5'- gUGCgGcgGCAGCACGCcgucgGCCagguGCUCgGCGa -3'
miRNA:   3'- -ACGaCaaCGUCGUGCG-----CGG----CGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 49008 0.66 0.838207
Target:  5'- gGCgucguagGggGCAGUACagucaCGCCGUUUGCGg -3'
miRNA:   3'- aCGa------CaaCGUCGUGc----GCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 130356 0.66 0.845973
Target:  5'- gUGCg---GCcGCAgGCGCCGUgCGCGc -3'
miRNA:   3'- -ACGacaaCGuCGUgCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 107002 0.66 0.835843
Target:  5'- aUGgUGUUGCGGCAC-UGCUGCUUccagacguucacgaGCGc -3'
miRNA:   3'- -ACgACAACGUCGUGcGCGGCGAG--------------CGC- -5'
14626 5' -59.4 NC_003521.1 + 127001 0.66 0.845973
Target:  5'- cGCUGcccgacgugGCGGUgcccgACGaCGCCGC-CGCGg -3'
miRNA:   3'- aCGACaa-------CGUCG-----UGC-GCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 207774 0.66 0.830269
Target:  5'- cGCUGg-GCGGCauccACGUGCUGCUCuaugGCa -3'
miRNA:   3'- aCGACaaCGUCG----UGCGCGGCGAG----CGc -5'
14626 5' -59.4 NC_003521.1 + 104163 0.66 0.830269
Target:  5'- cUGCgGcgGCGGCGCGgGUCGCacggcgUUGCGg -3'
miRNA:   3'- -ACGaCaaCGUCGUGCgCGGCG------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 169640 0.66 0.853562
Target:  5'- gUGCUGUUGUGGUcguagAgGUGCCGUUCa-- -3'
miRNA:   3'- -ACGACAACGUCG-----UgCGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 91456 0.66 0.860966
Target:  5'- aUGCgc--GCAuaCGCGCGCaGCUCGCGg -3'
miRNA:   3'- -ACGacaaCGUc-GUGCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 355 0.66 0.830269
Target:  5'- aGCUGccggagGCGGCGCcuGCGaCCGCUgcccgccucaCGCGg -3'
miRNA:   3'- aCGACaa----CGUCGUG--CGC-GGCGA----------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 45041 0.66 0.838207
Target:  5'- ---aGggGUcgagAGC-CGCGCCGCUCGUGc -3'
miRNA:   3'- acgaCaaCG----UCGuGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 36701 0.66 0.853562
Target:  5'- aGCUGgugaUGguGCccuuCGUGCCGCaCGCc -3'
miRNA:   3'- aCGACa---ACguCGu---GCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 136017 0.66 0.853562
Target:  5'- cGCUGUacGCcuGCACGCGgUGCUucCGCa -3'
miRNA:   3'- aCGACAa-CGu-CGUGCGCgGCGA--GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.