miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 36701 0.66 0.853562
Target:  5'- aGCUGgugaUGguGCccuuCGUGCCGCaCGCc -3'
miRNA:   3'- aCGACa---ACguCGu---GCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 36768 0.7 0.660531
Target:  5'- gUGCgacUGCGGCgacuggcagggccacGCGCugcggaGCCGCUCGCGg -3'
miRNA:   3'- -ACGacaACGUCG---------------UGCG------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 37276 0.66 0.860966
Target:  5'- cGCUGacGguGCACGCGCC-CUaCGaCa -3'
miRNA:   3'- aCGACaaCguCGUGCGCGGcGA-GC-Gc -5'
14626 5' -59.4 NC_003521.1 + 39149 0.67 0.788238
Target:  5'- gUGCUGccacCGGCG-GCGCaGCUCGCGg -3'
miRNA:   3'- -ACGACaac-GUCGUgCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 42804 0.66 0.845973
Target:  5'- gGCg---GCuGCACGCGCCGCaacgGCa -3'
miRNA:   3'- aCGacaaCGuCGUGCGCGGCGag--CGc -5'
14626 5' -59.4 NC_003521.1 + 43140 0.69 0.666391
Target:  5'- cGCUGggcguggaGguGCACGCGCUGgUgGCGc -3'
miRNA:   3'- aCGACaa------CguCGUGCGCGGCgAgCGC- -5'
14626 5' -59.4 NC_003521.1 + 44164 0.66 0.845973
Target:  5'- aGCa---GCAGCugGCGCCGUcgguacucCGCGa -3'
miRNA:   3'- aCGacaaCGUCGugCGCGGCGa-------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 45041 0.66 0.838207
Target:  5'- ---aGggGUcgagAGC-CGCGCCGCUCGUGc -3'
miRNA:   3'- acgaCaaCG----UCGuGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 45198 0.68 0.77047
Target:  5'- cGgaGcUGCAGCaACGCGaCCaGCUgGCGg -3'
miRNA:   3'- aCgaCaACGUCG-UGCGC-GG-CGAgCGC- -5'
14626 5' -59.4 NC_003521.1 + 46191 0.66 0.853562
Target:  5'- gGCUGcacGguGCugGUGUCGUgCGCGc -3'
miRNA:   3'- aCGACaa-CguCGugCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 49008 0.66 0.838207
Target:  5'- gGCgucguagGggGCAGUACagucaCGCCGUUUGCGg -3'
miRNA:   3'- aCGa------CaaCGUCGUGc----GCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 53045 0.67 0.794338
Target:  5'- cGCUGUgacgGCGGCguucuucuuugaucGgGCGCCGUucagUCGCu -3'
miRNA:   3'- aCGACAa---CGUCG--------------UgCGCGGCG----AGCGc -5'
14626 5' -59.4 NC_003521.1 + 53195 0.67 0.822165
Target:  5'- gGCca--GCGGCGCGCgGCCcgGCUCGCc -3'
miRNA:   3'- aCGacaaCGUCGUGCG-CGG--CGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 53955 0.68 0.72042
Target:  5'- aGCUGggccgacgagccgUGCuGCACGcCGCCGCUgggcCGCc -3'
miRNA:   3'- aCGACa------------ACGuCGUGC-GCGGCGA----GCGc -5'
14626 5' -59.4 NC_003521.1 + 55463 0.68 0.75225
Target:  5'- cGCUGgaagaGGCACuGCGCCGcCUUGCc -3'
miRNA:   3'- aCGACaacg-UCGUG-CGCGGC-GAGCGc -5'
14626 5' -59.4 NC_003521.1 + 56086 0.69 0.714711
Target:  5'- aGCUcgcGCAGCACGCGCagaucgaaguaGCgUCGCGu -3'
miRNA:   3'- aCGAcaaCGUCGUGCGCGg----------CG-AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 56143 0.75 0.350765
Target:  5'- gGCgagUGCGGCuCGUGCUGCUCGCu -3'
miRNA:   3'- aCGacaACGUCGuGCGCGGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 57986 0.8 0.18081
Target:  5'- cUGCUGUUGuCAGCGC-CGCCGaUCGCGg -3'
miRNA:   3'- -ACGACAAC-GUCGUGcGCGGCgAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 58777 0.69 0.714711
Target:  5'- cUGCagg-GCGGCGCGCGCCgGCgacgaCGCa -3'
miRNA:   3'- -ACGacaaCGUCGUGCGCGG-CGa----GCGc -5'
14626 5' -59.4 NC_003521.1 + 59153 0.73 0.448293
Target:  5'- aGCUGguggaucagcUGCGGCACgGCGCCGCggGCa -3'
miRNA:   3'- aCGACa---------ACGUCGUG-CGCGGCGagCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.