miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 198753 0.74 0.414098
Target:  5'- uUGCcGUgcucGCuGguCGCGCCGCUCGUGg -3'
miRNA:   3'- -ACGaCAa---CGuCguGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 198019 0.73 0.439597
Target:  5'- uUGCcGUUGCGGCGCGUGCaGC-CGCc -3'
miRNA:   3'- -ACGaCAACGUCGUGCGCGgCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 197927 0.66 0.845973
Target:  5'- cGCUGg-GCuccagaucgacgGGCGCGCGCUugaGCUgCGCGa -3'
miRNA:   3'- aCGACaaCG------------UCGUGCGCGG---CGA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 196762 0.68 0.742991
Target:  5'- cUGCUGcccCGGCcgGCGCGaCCGCgggCGCGg -3'
miRNA:   3'- -ACGACaacGUCG--UGCGC-GGCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 196311 0.66 0.830269
Target:  5'- aUGCUGgccaUGCAGCGCauGgGCCGgUUGUu -3'
miRNA:   3'- -ACGACa---ACGUCGUG--CgCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 191141 0.66 0.860966
Target:  5'- gGCUGa--CGGCGacaGCGCCGCgcUCGCc -3'
miRNA:   3'- aCGACaacGUCGUg--CGCGGCG--AGCGc -5'
14626 5' -59.4 NC_003521.1 + 190346 0.68 0.75225
Target:  5'- cGCUGU---GGCACGCGCCGggCaGCa -3'
miRNA:   3'- aCGACAacgUCGUGCGCGGCgaG-CGc -5'
14626 5' -59.4 NC_003521.1 + 184663 0.67 0.779415
Target:  5'- cUGCgUGUUcgcgcgcagcgaGCAGCACGaGCCGCacUCGCc -3'
miRNA:   3'- -ACG-ACAA------------CGUCGUGCgCGGCG--AGCGc -5'
14626 5' -59.4 NC_003521.1 + 183906 0.71 0.578394
Target:  5'- gUGCUGgagGCGGUGCuGCGgCGCugUCGCGa -3'
miRNA:   3'- -ACGACaa-CGUCGUG-CGCgGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 183651 0.69 0.666391
Target:  5'- cGCUucGUgcUGCGGCACGCcgacgaccuGCCGCgCGUGg -3'
miRNA:   3'- aCGA--CA--ACGUCGUGCG---------CGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 183582 0.66 0.845973
Target:  5'- gGCcaacugGCcGCGCGagaGCCGCUCGCc -3'
miRNA:   3'- aCGacaa--CGuCGUGCg--CGGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 182040 0.69 0.705144
Target:  5'- aUGCgucGUcGcCGGCGCGCGCCGCccUGCa -3'
miRNA:   3'- -ACGa--CAaC-GUCGUGCGCGGCGa-GCGc -5'
14626 5' -59.4 NC_003521.1 + 181451 0.7 0.64683
Target:  5'- gUGCUGc-GCGGCguccagcggcugGCGCGCCGCcUGCa -3'
miRNA:   3'- -ACGACaaCGUCG------------UGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 181393 0.76 0.328855
Target:  5'- cGCUGccgGCGGCG-GCGCCGCugUCGCGu -3'
miRNA:   3'- aCGACaa-CGUCGUgCGCGGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 180404 0.68 0.733642
Target:  5'- cUGCUGgUGguGCugGCGgCCGCgauacuggUCGUa -3'
miRNA:   3'- -ACGACaACguCGugCGC-GGCG--------AGCGc -5'
14626 5' -59.4 NC_003521.1 + 179462 0.74 0.405804
Target:  5'- aGCUGUUGCAGgaaGCGgGCCGUggGCa -3'
miRNA:   3'- aCGACAACGUCg--UGCgCGGCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 178789 0.7 0.656619
Target:  5'- cGUUGUUGCAGgACGgGCCcccgggcacCUCGUGg -3'
miRNA:   3'- aCGACAACGUCgUGCgCGGc--------GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 178696 0.67 0.800372
Target:  5'- cGCUGUUGCAcacGCAUugguuccccgcgcggGCGCCGaa-GCGu -3'
miRNA:   3'- aCGACAACGU---CGUG---------------CGCGGCgagCGC- -5'
14626 5' -59.4 NC_003521.1 + 177729 0.69 0.685849
Target:  5'- cUGCUGgagggcggGCAGCGCGcCGgCGCagcuguacggggUCGCGg -3'
miRNA:   3'- -ACGACaa------CGUCGUGC-GCgGCG------------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 176940 0.71 0.588115
Target:  5'- -aCUGcUGCAGCucccgGCGCGCCGcCUCGUc -3'
miRNA:   3'- acGACaACGUCG-----UGCGCGGC-GAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.