miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 36399 0.73 0.448293
Target:  5'- cUGCUGgcgGCAGCGCGgGgCGUggauuUCGCGg -3'
miRNA:   3'- -ACGACaa-CGUCGUGCgCgGCG-----AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 109706 0.73 0.457084
Target:  5'- cGCUGUcccuucccgGCAGC-CGCGCCGCccCGCc -3'
miRNA:   3'- aCGACAa--------CGUCGuGCGCGGCGa-GCGc -5'
14626 5' -59.4 NC_003521.1 + 117385 0.73 0.457084
Target:  5'- gUGCaGgUGCGGCACGCGCUguGCUgGCa -3'
miRNA:   3'- -ACGaCaACGUCGUGCGCGG--CGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 129996 0.72 0.493133
Target:  5'- cGCUGcgccggcgGCGGCGCGCaacgGCCGCUgGCu -3'
miRNA:   3'- aCGACaa------CGUCGUGCG----CGGCGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 233073 0.72 0.50235
Target:  5'- cUGCUGggacUGCcGC-CGCcuccGCCGCUCGCGc -3'
miRNA:   3'- -ACGACa---ACGuCGuGCG----CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 137690 0.72 0.530431
Target:  5'- cUGgUGcUGCAGCAC-CGCCGCgCGCu -3'
miRNA:   3'- -ACgACaACGUCGUGcGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 135339 0.72 0.539921
Target:  5'- gGCggGUUGCcucccucccGCGCGCGCCGuCUcCGCGg -3'
miRNA:   3'- aCGa-CAACGu--------CGUGCGCGGC-GA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 20733 0.71 0.549467
Target:  5'- cGCUGgcggUGCAucagcugcguGUACGCGCUGCUgGUGc -3'
miRNA:   3'- aCGACa---ACGU----------CGUGCGCGGCGAgCGC- -5'
14626 5' -59.4 NC_003521.1 + 103375 0.71 0.559065
Target:  5'- cGCagaccgUGUcggGCAGC-CGCGCgUGCUCGCGg -3'
miRNA:   3'- aCG------ACAa--CGUCGuGCGCG-GCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 166127 0.71 0.567743
Target:  5'- cGCUGccGCGGCGcCGCcgucgcuGCUGCUUGCGg -3'
miRNA:   3'- aCGACaaCGUCGU-GCG-------CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 134542 0.71 0.567743
Target:  5'- uUGCUGUUGCccuccacGGCgAUGCGCaGCUCGUc -3'
miRNA:   3'- -ACGACAACG-------UCG-UGCGCGgCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 103124 0.71 0.568709
Target:  5'- aGCUGgcGCAGCGCGCGgCGgUgcUGCa -3'
miRNA:   3'- aCGACaaCGUCGUGCGCgGCgA--GCGc -5'
14626 5' -59.4 NC_003521.1 + 225972 0.71 0.568709
Target:  5'- cGCUGUUGgc-CACGCGCCGCaCGUa -3'
miRNA:   3'- aCGACAACgucGUGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 137298 0.71 0.568709
Target:  5'- aGCUGcggGUGGCGCG-GCUGCUgCGCGg -3'
miRNA:   3'- aCGACaa-CGUCGUGCgCGGCGA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 150619 0.71 0.578394
Target:  5'- gGCUGUUGCGGCG-GCuGCUGCgcagGCGg -3'
miRNA:   3'- aCGACAACGUCGUgCG-CGGCGag--CGC- -5'
14626 5' -59.4 NC_003521.1 + 183906 0.71 0.578394
Target:  5'- gUGCUGgagGCGGUGCuGCGgCGCugUCGCGa -3'
miRNA:   3'- -ACGACaa-CGUCGUG-CGCgGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 176940 0.71 0.588115
Target:  5'- -aCUGcUGCAGCucccgGCGCGCCGcCUCGUc -3'
miRNA:   3'- acGACaACGUCG-----UGCGCGGC-GAGCGc -5'
14626 5' -59.4 NC_003521.1 + 222588 0.71 0.588115
Target:  5'- cGCUG--GCGGaugaaaACGCGCaGCUCGCGg -3'
miRNA:   3'- aCGACaaCGUCg-----UGCGCGgCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 157975 0.71 0.588115
Target:  5'- cGCUG--GUAGCgACGcCGCCGCcCGCGg -3'
miRNA:   3'- aCGACaaCGUCG-UGC-GCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 85670 0.71 0.593962
Target:  5'- aGCUGUUccgagccggcgucCAGCACGCGCCGCagGUu -3'
miRNA:   3'- aCGACAAc------------GUCGUGCGCGGCGagCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.